Reol: R interface to the Encyclopedia of Life
Version 1.55

An R interface to the Encyclopedia of Life API. Includes functions for downloading and extracting information off the EOL pages.

Browse man pages Browse package API and functions Browse package files

AuthorBarb Banbury <darwinthesun@gmail.com>, Brian O'Meara <bomeara@utk.edu>
Date of publication2014-04-19 08:13:16
MaintainerBarb Banbury <darwinthesun@gmail.com>
LicenseGPL (>= 2)
Version1.55
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("Reol")

Man pages

APItaxon: Encode Taxon Name
CollectDataforWeb: Collect Data from EOL Pages for Website
CombineHierarchyInfo: Combine Hierarchy Info
DataObjectOverview: Data Object Information
DownloadHierarchy: Download Hierarchy Content From Contributors
DownloadSearchedTaxa: Download Page Content From EOL
FirstTwo: Get Binomial Nomenclature
GatherProviderDataFrame: Gather EOL Provider Information
GatherSynonyms: Gathers A List Of Taxonomic Synonyms
GetCommonNames: Gather Common Name Information
GetHierID: Gets Hierarchy page ID
GetIUCNStat: Gather IUCN Status for EOL Pages
GetReferences: Gather EOL References
GetRichnessScores: Gather EOL Richness Score Information
MakeEdgeLabels: Creates Edge Labels for Hierarchy Trees
MakeHierarchyTree: Creates Hierarchical Trees
MatchHierPageToEOLdata: Match Data Functions
MatchTaxatoEOLID: Matches Taxa to and eolID
MyEOLs: Example EOL and Hierarchy pages
OneFileHierarchy: Creates A Taxonomic Hierarchy for a single Taxon
PageProcessing: Process XML Data into tree format
PingAPI: Test the working order of the EOL API
Reol-package: Reol
RepeatDataToDrop: Repeat Data To Drop
subsetDataForHierTrees: Subset Data For Hier Trees
TaxonChildren: Gathers A List Of Taxonomic Parents and Offspring

Functions

APItaxon Man page Source code
AutofillTaxonNames Man page Source code
BestProvider Man page Source code
CNCount Man page Source code
CollectDataforWeb Man page Source code
CombineDataObjectInformation Man page Source code
CombineHierarchyInfo Man page Source code
DOCount Man page Source code
DataObjectOverview Man page Source code
DataProcessing Man page Source code
DownloadEOLpages Man page Source code
DownloadHierarchy Man page Source code
DownloadSearchedTaxa Man page Source code
DropADim Man page Source code
FirstTwo Man page Source code Source code
GatherDataObjectInformation Man page Source code
GatherProviderDataFrame Man page Source code
GatherSynonyms Man page Source code
GetCommonNames Man page Source code
GetHierID Man page Source code
GetIUCNStat Man page Source code
GetReferences Man page Source code
GetRichnessScores Man page Source code
MakeEdgeLabels Man page Source code
MakeHierarchyTree Man page Source code
MakeTreeData Man page Source code
MatchDataToTreeTips Man page Source code
MatchHierPageToEOLdata Man page Source code
MatchTaxatoEOLID Man page Source code
MergeTaxonomies Man page Source code
MyEOLs Man page
MyEOLs.rda Man page
MyHiers Man page
MyHiers.rda Man page
NodeLabelList Man page Source code
OneFileHierarchy Man page Source code
PageProcessing Man page Source code Source code
PingAPI Man page Source code
ProviderCount Man page Source code
RemoveNAFiles Man page Source code
Reol Man page
Reol-package Man page
RepeatDataToDrop Man page Source code
ReturnTaxSet Man page Source code
TaxonChildren Man page Source code
TaxonParents Man page Source code
WhatToDoWithDuplicateEdgeNames Man page Source code
getTipList Man page Source code
node.leaves Man page Source code
node.offspring Man page Source code
providerCount Man page Source code
reol Man page
subsetDataForHierTrees Man page Source code
whichEdge Man page Source code

Files

inst
inst/tests
inst/tests/testAPI2.R
inst/tests/testAPI1.R
inst/tests/testPing.R
inst/extdata
inst/extdata/Asparagales.tre
inst/doc
inst/doc/ReolUserManual.pdf
NAMESPACE
data
data/MyHiers.rda
data/MyEOLs.rda
R
R/DownloadEOLpages.R
R/GatherProviderDataFrame.R
R/DownloadSearchedTaxa.R
R/GetIUCNStat.R
R/GetCommonNames.R
R/CollectDataforWeb.R
R/PageProcessing.R
R/DataObjectOverview.R
R/PingAPI.R
R/DownloadHierarchy.R
R/MakeEdgeLabels.R
R/TaxonChildren.R
R/FirstTwo.R
R/MakeHierarchyTree.R
R/GatherSynonyms.R
R/GetRichnessScores.R
R/GetHierID.R
R/MatchHierPageToEOLdata.R
R/GetReferences.R
R/OneFileHierarchy.R
vignettes
vignettes/ReolUserManual.pdf
vignettes/ReolUserManual-014.pdf
vignettes/ReolUserManual.tex
vignettes/ReolUserManual-018.pdf
vignettes/ReolUserManual-017.pdf
vignettes/ReolUserManual-015.pdf
MD5
DESCRIPTION
man
man/OneFileHierarchy.Rd
man/RepeatDataToDrop.Rd
man/CombineHierarchyInfo.Rd
man/FirstTwo.Rd
man/PingAPI.Rd
man/DataObjectOverview.Rd
man/subsetDataForHierTrees.Rd
man/APItaxon.Rd
man/GatherSynonyms.Rd
man/TaxonChildren.rd
man/MakeHierarchyTree.Rd
man/GetIUCNStat.Rd
man/DownloadSearchedTaxa.Rd
man/GetCommonNames.Rd
man/GetReferences.Rd
man/Reol-package.Rd
man/DownloadHierarchy.Rd
man/CollectDataforWeb.Rd
man/GetHierID.Rd
man/MyEOLs.Rd
man/MakeEdgeLabels.Rd
man/MatchTaxatoEOLID.Rd
man/GetRichnessScores.Rd
man/PageProcessing.Rd
man/MatchHierPageToEOLdata.Rd
man/GatherProviderDataFrame.Rd
Reol documentation built on May 19, 2017, 10:44 p.m.