ReorderCluster: Reordering the dendrogram according to the class labels

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Tools for performing the leaf reordering for the dendrogram that preserves the hierarchical clustering result and at the same time tries to group instances from the same class together.

Author
Natalia Novoselova,Frank Klawonn, Junxi Wang
Date of publication
2014-07-23 15:24:32
Maintainer
Natalia Novoselova <novos65@mail.ru>
License
GPL (>= 3)
Version
1.0

View on CRAN

Man pages

CalcMerge
Forms the binary vector to mark the nodes with identical...
colorDendClass
Makes the plot of the dendrogram, visualizing the class label...
funMerge
Recover the optimal sequence of leaves in the hierarchical...
leukemia
Real biological dataset to perform the analysis.
OrderingJoseph
Makes the calculation of the evaluation function for each...
OrderingJosephC
Makes the calculation of the evaluation function for each...
RearrangeData
Sample function to perform optimal reordering of the...
RearrangeJoseph
Makes the initialization of auxiliary matrices and calls to...
ReorderCluster-package
optimal reordering of the hierarchical tree according to...
SubTree
Simplifies the initial hierarchical tree by reducing the...
testBar
For each node (subtree) of the hierarchical tree forms two...
testData1
Simulates the dataset for analysis.
testData2
Simulates the dataset for analysis.

Files in this package

ReorderCluster
ReorderCluster/src
ReorderCluster/src/OrderingJosephC.cpp
ReorderCluster/src/RcppExports.cpp
ReorderCluster/NAMESPACE
ReorderCluster/data
ReorderCluster/data/leukemia.txt.gz
ReorderCluster/R
ReorderCluster/R/testBar.R
ReorderCluster/R/RearrangeData.R
ReorderCluster/R/colorDendClass.R
ReorderCluster/R/SubTree.R
ReorderCluster/R/CalcMerge.R
ReorderCluster/R/funMerge.R
ReorderCluster/R/testData1.R
ReorderCluster/R/RcppExports.R
ReorderCluster/R/RearrangeJoseph.R
ReorderCluster/R/testData2.R
ReorderCluster/R/OrderingJoseph.R
ReorderCluster/MD5
ReorderCluster/DESCRIPTION
ReorderCluster/man
ReorderCluster/man/leukemia.Rd
ReorderCluster/man/funMerge.Rd
ReorderCluster/man/SubTree.Rd
ReorderCluster/man/testBar.Rd
ReorderCluster/man/OrderingJosephC.Rd
ReorderCluster/man/colorDendClass.Rd
ReorderCluster/man/OrderingJoseph.Rd
ReorderCluster/man/testData1.Rd
ReorderCluster/man/RearrangeData.Rd
ReorderCluster/man/CalcMerge.Rd
ReorderCluster/man/testData2.Rd
ReorderCluster/man/RearrangeJoseph.Rd
ReorderCluster/man/ReorderCluster-package.Rd