ReorderCluster: Reordering the dendrogram according to the class labels
Version 1.0

Tools for performing the leaf reordering for the dendrogram that preserves the hierarchical clustering result and at the same time tries to group instances from the same class together.

Browse man pages Browse package API and functions Browse package files

AuthorNatalia Novoselova,Frank Klawonn, Junxi Wang
Date of publication2014-07-23 15:24:32
MaintainerNatalia Novoselova <novos65@mail.ru>
LicenseGPL (>= 3)
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ReorderCluster")

Man pages

CalcMerge: Forms the binary vector to mark the nodes with identical...
colorDendClass: Makes the plot of the dendrogram, visualizing the class label...
funMerge: Recover the optimal sequence of leaves in the hierarchical...
leukemia: Real biological dataset to perform the analysis.
OrderingJoseph: Makes the calculation of the evaluation function for each...
OrderingJosephC: Makes the calculation of the evaluation function for each...
RearrangeData: Sample function to perform optimal reordering of the...
RearrangeJoseph: Makes the initialization of auxiliary matrices and calls to...
ReorderCluster-package: optimal reordering of the hierarchical tree according to...
SubTree: Simplifies the initial hierarchical tree by reducing the...
testBar: For each node (subtree) of the hierarchical tree forms two...
testData1: Simulates the dataset for analysis.
testData2: Simulates the dataset for analysis.

Functions

CalcMerge Man page Source code
OrderingJoseph Man page Source code
OrderingJosephC Man page Source code
RearrangeData Man page Source code
RearrangeJoseph Man page Source code
ReorderCluster Man page
ReorderCluster-package Man page
SubTree Man page Source code
colorDendClass Man page Source code
funMerge Man page Source code
leukemia Man page
testBar Man page Source code
testData1 Man page Source code
testData2 Man page Source code

Files

src
src/OrderingJosephC.cpp
src/RcppExports.cpp
NAMESPACE
data
data/leukemia.txt.gz
R
R/testBar.R
R/RearrangeData.R
R/colorDendClass.R
R/SubTree.R
R/CalcMerge.R
R/funMerge.R
R/testData1.R
R/RcppExports.R
R/RearrangeJoseph.R
R/testData2.R
R/OrderingJoseph.R
MD5
DESCRIPTION
man
man/leukemia.Rd
man/funMerge.Rd
man/SubTree.Rd
man/testBar.Rd
man/OrderingJosephC.Rd
man/colorDendClass.Rd
man/OrderingJoseph.Rd
man/testData1.Rd
man/RearrangeData.Rd
man/CalcMerge.Rd
man/testData2.Rd
man/RearrangeJoseph.Rd
man/ReorderCluster-package.Rd
ReorderCluster documentation built on May 19, 2017, 10:28 p.m.