RnavGraph: Using Graphs as a Navigational Infrastructure
Version 0.1.8

GUI to explore high dimensional data (including image data) using graphs as navigational infrastructure.

Browse man pages Browse package API and functions Browse package files

AuthorAdrian R. Waddell and R. Wayne Oldford
Date of publication2014-12-18 15:50:43
MaintainerAdrian Waddell <adrian@waddell.ch>
LicenseGPL-2
Version0.1.8
URL http://www.navgraph.com
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("RnavGraph")

Man pages

closeViz: Method that gets called when switching away from a graph that...
closeViz-methods: Initialization of a new Display
completegraph: Create a complete graph of class graphAM
initializeViz: Method that gets called for initializing a display for some...
initializeViz-methods: Initialization of a new Display
linegraph: Linegraph of a graph
linegraph-methods: Linegraph of a graph
names_--methods: Change the names of a NG_data object
names-methods: Show the variable names of a NG_data object
navGraph: Start an navGraph session
newgraph: Create a graph object of class graph
ng_2d: Visualization instruction for 2d scatterplots on a tk2d...
ng_2d_myplot: Visualization instruction for 2d scatterplots on a user...
ng_data: Create an NG_data object to be used by a navGraph session
ng_get: Extract data from a NG_data, NG_graph, NG_path or navgraph...
ng_get_color: Extract point coloring from an active navGraph session for a...
ng_get-methods: Access data from a NG_... object
ng_get_size: Extract point sizes from an active navGraph session for a...
ng_graph: Create an NG_data object to be used by a navGraph session
ng_image_array_gray: Convert a matrix or data.frame of image data into a NG_image...
ng_image_files: Import color image files (png, jpg, bmp, etc...) into a...
ng_set: Shows which data can be modified in a NG_data, NG_graph,...
ng_set_color_--methods: Change colors of data points in an active navGraph session
ng_set_colorsetter: Change colors of data points in an active navGraph session
ng_set_--methods: ~~ Methods for Function ng_set<- ~~
ng_set-methods: Change data in NG_... objects
ng_setsetter: Modify data in a NG_data, NG_graph, NG_path or navgraph...
ng_set_size_--methods: Change sizes of data points in an active navGraph session
ng_set_sizesetter: Change sizes of data points in an active navGraph session
ng_update: Synchronize a navGraph handler with a running navGraph sesson
NG_Visualization-class: Class '"NG_Visualization"'
ng_walk: Walk a path on the current graph in a navGraph session
olive: Fatty Acid Composition of Italian Olive Oils
plot-methods: Plot the graph saved in a NG_data object.
RnavGraph-package: Overview RnavGraph package
scagEdgeWeights: Create a from-to edge matrix with the scagnostic weights
scagGraph: Create a list of graphs, given the scagnostics edge weights
scagNav: Start a navGraph session and filter the navigation graph's...
shortnames: Returns the shortnames of a NG_data object.
shortnames_--methods: Change the shortnames of a NG_data object
shortnames-methods: Show the shortnames of a NG_data object
shortnamessetter: Modify the shortnames of a NG_data object.
updateViz: Method that gets called when bullet state is changed on a...
updateViz-methods: Initialization of a new Display

Functions

NG_Visualization-class Man page
RnavGraph Man page
RnavGraph-package Man page
arriveAtNode Source code
canvas2graph Source code
closePlots Source code
closeViz Man page
closeViz,NG_Visualization-method Man page
closeViz,NG_Viz2DAxis-method Man page
closeViz,NG_Viztk2d-method Man page
closeViz-methods Man page
closenavGraph Source code
completegraph Man page Source code
edgeSeen Source code
graph2canvas Source code
highlightAdj Source code
highlightCurrent Source code
highlightPath Source code
initRotation Source code
initializeViz Man page
initializeViz,NG_Visualization-method Man page
initializeViz,NG_Viz2DAxis-method Man page
initializeViz,NG_Viztk2d-method Man page
initializeViz-methods Man page
leaveNode Source code
linegraph Man page
linegraph,graph-method Man page
linegraph-methods Man page
moveBullet Source code
moveLabel Source code
moveNode Source code
names,NG_data-method Man page
names-methods Man page
names<-,NG_data,ANY-method Man page
names<--methods Man page
navGraph Man page Source code
newgraph Man page Source code
ng_2d Man page Source code
ng_2dRotationMatrix Source code
ng_2d_dist Source code
ng_2d_myplot Man page Source code
ng_2d_xcoord Source code
ng_2d_ycoord Source code
ng_data Man page Source code
ng_get Man page
ng_get,NG_data-method Man page
ng_get,NG_graph-method Man page
ng_get,NG_path-method Man page
ng_get,NavGraph_handler-method Man page
ng_get-methods Man page
ng_get_color Man page Source code
ng_get_size Man page Source code
ng_graph Man page Source code
ng_image_array_gray Man page Source code
ng_image_files Man page Source code
ng_set Man page
ng_set,NG_data-method Man page
ng_set,NG_graph-method Man page
ng_set-methods Man page
ng_set<- Man page
ng_set<-,NG_data-method Man page
ng_set<-,NG_graph-method Man page
ng_set<-,NavGraph_handler-method Man page
ng_set<--methods Man page
ng_set_color<- Man page
ng_set_color<-,NavGraph_handler-method Man page
ng_set_color<--methods Man page
ng_set_size<- Man page
ng_set_size<-,NavGraph_handler-method Man page
ng_set_size<--methods Man page
ng_update Man page Source code
ng_walk Man page Source code
nitializePlots Source code
nodeNr Source code
normalState Source code
olive Man page
onAttach Source code
onLoad Source code
parsePath Source code
parsePath2Vec Source code
pathGUI Source code
plot,NG_graph,ANY-method Man page
plot-methods Man page
printvector Source code
registerButtonClick Source code
sPath Source code
sPathOnCanvas Source code
scagEdgeWeights Man page Source code
scagGraph Man page Source code
scagNav Man page Source code
settingsMenue Source code
shortnames Man page
shortnames,NG_data-method Man page
shortnames-methods Man page
shortnames<- Man page
shortnames<-,NG_data-method Man page
shortnames<--methods Man page
showPath Source code
switchGraph Source code
tableelement Source code
tcl2num Source code
tcl2str Source code
tcl2xy Source code
updateLabels Source code
updatePlots Source code
updateViz Man page
updateViz,NG_Visualization-method Man page
updateViz,NG_Viz2DAxis-method Man page
updateViz,NG_Viztk2d-method Man page
updateViz-methods Man page
vizVarNames Source code
walkEdge Source code
walkPath Source code

Files

inst
inst/tcl
inst/tcl/tkScatterplotV3.tcl
inst/tcl/GraphDisplay.tcl
inst/tcl/tkScatterplotV1.tcl
inst/doc
inst/doc/RnavGraph.pdf
inst/doc/RnavGraph.R
inst/doc/RnavGraph.Rnw
src
src/Makevars
src/image_scale.c
src/display_stuff.c
NAMESPACE
demo
demo/ng_2d_images_iris.R
demo/ng_2d_image_files_aloi.R
demo/ng_2d_olive.R
demo/ng_2d_iris.R
demo/ng_2d_myplot_base.R
demo/ng_2d_myplot_grid.R
demo/ng_2d_images_digits.R
demo/ng_2d_myplot_hexbin.R
demo/00Index
demo/ng_2d_myplot_rgl.R
demo/ng_2d_images_faces.R
demo/ng_2d_images_alpha_letter.R
demo/ng_2d_images_frey_LLE.R
demo/ng_2d_images_frey_isomap.R
demo/ng_own_viz.R
demo/ng_2d_scagnostics_olive.R
NEWS
data
data/olive.rda
R
R/AllGenerics.R
R/SettingClasses.R
R/graphtools.R
R/Visualization.R
R/Viz2D_tk2d.R
R/Visualization2D.R
R/ng_path.R
R/FunctionNavGraph.R
R/NavGraphHandler.R
R/Viz2D_Axis.R
R/ng_graph.R
R/scagNav.R
R/GraphDisplay.R
R/navGraph.R
R/ng_image.R
R/zzz.R
R/ng_data.R
vignettes
vignettes/tikz_edgeSelect.tex
vignettes/products.tex
vignettes/tikz_animation.tex
vignettes/rep_p_GLG.tex
vignettes/img
vignettes/img/tk2dimages1.png
vignettes/img/m4_2.png
vignettes/img/f2_1.png
vignettes/img/m4_1.png
vignettes/img/tk2dImagesObject.png
vignettes/img/f1_2.png
vignettes/img/graph.png
vignettes/img/f2_2.png
vignettes/img/m2_1.png
vignettes/img/m1_1.png
vignettes/img/settings.png
vignettes/img/Iris2D.png
vignettes/img/m1_2.png
vignettes/img/m3_1.png
vignettes/img/tk2dGlyphs.png
vignettes/img/imageDigits.png
vignettes/img/aloi.jpg
vignettes/img/f1_1.png
vignettes/img/tk2dcolors.png
vignettes/img/all.png
vignettes/img/Iris3Dgraph.png
vignettes/img/tk2dcolors2.png
vignettes/tikz_tk2d_main.tex
vignettes/tikz_drag.tex
vignettes/tikz_walk.tex
vignettes/temp.tex
vignettes/RnavGraph.Rnw
vignettes/tikz_modifyGraph.tex
vignettes/lg.tex
vignettes/p_prod.tex
MD5
build
build/vignette.rds
DESCRIPTION
man
man/ng_data.Rd
man/ng_setsetter.Rd
man/plot-methods.Rd
man/names_--methods.Rd
man/closeViz.Rd
man/ng_update.Rd
man/shortnames-methods.Rd
man/updateViz-methods.Rd
man/olive.Rd
man/closeViz-methods.Rd
man/ng_set_size_--methods.Rd
man/completegraph.Rd
man/initializeViz-methods.Rd
man/navGraph.Rd
man/names-methods.Rd
man/newgraph.Rd
man/ng_2d_myplot.Rd
man/ng_walk.Rd
man/linegraph.Rd
man/scagNav.Rd
man/shortnamessetter.Rd
man/ng_set-methods.Rd
man/ng_graph.Rd
man/NG_Visualization-class.Rd
man/scagGraph.Rd
man/ng_image_files.Rd
man/ng_2d.Rd
man/initializeViz.Rd
man/ng_set_sizesetter.Rd
man/ng_set.Rd
man/RnavGraph-package.Rd
man/ng_image_array_gray.Rd
man/ng_set_colorsetter.Rd
man/shortnames.Rd
man/ng_get.Rd
man/ng_set_--methods.Rd
man/ng_get_color.Rd
man/ng_set_color_--methods.Rd
man/ng_get_size.Rd
man/shortnames_--methods.Rd
man/ng_get-methods.Rd
man/linegraph-methods.Rd
man/scagEdgeWeights.Rd
man/updateViz.Rd
RnavGraph documentation built on May 29, 2017, 4:18 p.m.