Rodam-package: Wrapper Functions for 'ODAM' (Open Data for Access and...
In Rodam: Wrapper Functions for 'ODAM' (Open Data for Access and Mining) Web Services
Rodam-package R Documentation
Wrapper Functions for 'ODAM' (Open Data for Access and Mining) Web Services
Description
'ODAM' (Open Data for Access and Mining) is a framework that implements a simple way to make research data broadly accessible and fully available for reuse, including by a script language such as R. The main purpose is to make a dataset accessible online with a minimal effort from the data provider, and to allow any scientists or bioinformaticians to be able to explore the dataset and then extract a subpart or the totality of the data according to their needs. To install the 'ODAM' software suite on your own server, this requires a machine (virtual or not) with a recent OS that support Docker. See [1].
The Rodam package has only one class,
odamws
that provides methods to allow you to retrieve online data using 'ODAM' Web Services. This obviously requires that data are implemented according the 'ODAM' approach , namely that the data subsets were deposited in the suitable data repository in the form of TSV files associated with their metadata also described in TSV files. See [2] for more details.
Author(s)
Maintainer: Daniel Jacob
References
Making experimental data tables in the life sciences more FAIR: a pragmatic approach
https://academic.oup.com/gigascience/article/9/12/giaa144/6034785
ODAM: Deployment and User's Guide
https://inrae.github.io/ODAM/
See Also
The class that actually implements the API layer for the 'ODAM' web services
odamws
Rodam documentation built on March 18, 2022, 6:16 p.m.
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| Rodam-package | R Documentation |
Wrapper Functions for 'ODAM' (Open Data for Access and Mining) Web Services
Description
'ODAM' (Open Data for Access and Mining) is a framework that implements a simple way to make research data broadly accessible and fully available for reuse, including by a script language such as R. The main purpose is to make a dataset accessible online with a minimal effort from the data provider, and to allow any scientists or bioinformaticians to be able to explore the dataset and then extract a subpart or the totality of the data according to their needs. To install the 'ODAM' software suite on your own server, this requires a machine (virtual or not) with a recent OS that support Docker. See [1].
The Rodam package has only one class,
odamws
that provides methods to allow you to retrieve online data using 'ODAM' Web Services. This obviously requires that data are implemented according the 'ODAM' approach , namely that the data subsets were deposited in the suitable data repository in the form of TSV files associated with their metadata also described in TSV files. See [2] for more details.
Author(s)
Maintainer: Daniel Jacob
References
Making experimental data tables in the life sciences more FAIR: a pragmatic approach https://academic.oup.com/gigascience/article/9/12/giaa144/6034785
ODAM: Deployment and User's Guide https://inrae.github.io/ODAM/
See Also
The class that actually implements the API layer for the 'ODAM' web services
odamws
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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