GraphGeodesic: Graph Geodesic between leaves of unweighted tree

In Rogue: Identify Rogue Taxa in Sets of Phylogenetic Trees

Graph Geodesic between leaves of unweighted tree

Description

Graph Geodesic between leaves of unweighted tree

Usage

GraphGeodesic(x, nTip = length(x$tip.label), log = FALSE, asMatrix = TRUE)

Cophenetic(x, nTip = length(x$tip.label), log = FALSE, asMatrix = TRUE)

Arguments

x	Object of class phylo.
nTip	Integer specifying number of leaves.
asMatrix	Logical specifying whether to coerce output to matrix format.

Value

GraphGeodesic() returns an unnamed integer matrix describing the number of edges between each pair of edges.

Author(s)

Martin R. Smith, modifying algorithm by Emmanuel Paradis in ape::dist.nodes().

Examples

GraphGeodesic(TreeTools::BalancedTree(5))

Rogue documentation built on April 1, 2023, 12:14 a.m.