Files in Rtropical

Data Analysis Tools over Space of Phylogenetic Trees Using Tropical Geometry

NEWS.md README.md R/sim_trees.R R/tropsvm.R R/troppca.obj.R R/summary.cv.tropsvm.R R/coef.cv.tropsvm.R R/linsp_to_poly.R R/lungfish.R R/troppca.linsp2poly.R R/predict.cv.tropsvm.R R/apicomplexa.R R/predict.tropsvm.R R/plot.tropca.R R/troppca.linsp.R R/polytope_iso.R R/as.vector.phylo.R R/all_trees.R R/as.matrix.multiPhylo.R R/read.tree.to.data.matrix.R R/troproj.poly.R R/assignment_finder.R R/coef.tropsvm.R R/troppca.poly.R R/dets.R R/read.nexus.to.data.matrix.R R/tropsvm_helper.R R/tropFW.R R/troproj.linsp.R R/cv.tropsvm.R R/tropseg.R R/tropdet.R inst/doc/usage.Rmd inst/doc/usage.R tests/testthat.R tests/testthat/test-projection.R tests/testthat/test-as.matrix.R vignettes/usage.Rmd man/summary.cv.tropsvm.Rd man/tropdet.Rd man/polytope_iso.Rd man/troppca.obj.Rd man/troppca.poly.Rd man/linsp_to_poly.Rd man/tropproj.poly.Rd man/as.vector.phylo.Rd man/lungfish.Rd man/read.nexus.to.data.matrix.Rd man/troppca.linsp.Rd man/tropFW.Rd man/tropsvm_helper.Rd man/dets.Rd man/coef.tropsvm.Rd man/plot.troppca.Rd man/apicomplexa.Rd man/coef.cv.tropsvm.Rd man/troppca.linsp2poly.Rd man/tropseg.Rd man/assignment_finder.Rd man/tropproj.linsp.Rd man/tropsvm.Rd man/as.matrix.multiPhylo.Rd man/read.tree.to.data.matrix.Rd man/sim_trees.Rd man/cv.tropsvm.Rd man/all_trees.Rd man/predict.cv.tropsvm.Rd man/predict.tropsvm.Rd