RunPerm: Run permutations

In SAMPLE: Estimate Sampling Effort for Species Occurrence Rates

Run permutations

Description

This function defines the number of permutations (default = 50) and subsequently runs the permutations on an input dataframe. A minimum number of 10 permutations is recommended in order to avoid having very large or very small stability values due to the stochastic nature of the process. On a large dataset, increasing the number of permutations can considerably slow down the analysis.

Usage

RunPerm(input, replicates = 50)

Arguments

input	Input dataframe (a dataframe object).
replicates	Number of permutation replicates to perform (an integer; default replicates=50).

Value

A dataframe with the output values of the permutation analysis.

Examples

data("coral_symbionts")
perm <- RunPerm(input = coral_symbionts,replicates = 50)
perm

SAMPLE documentation built on Sept. 15, 2026, 5:09 p.m.