Description Usage Details Value References
An Example data for package SASPECT
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This data example is from the mouse study described in Whiteaker et. al. 2007. It contains the information of 333 peptides from 20 LC-MS/MS experiments (10 from the normal group and 10 from the control group).
mouseTissue
is a list of four components:
peptideData |
a list of two numeric matrices, |
pep.set |
a character vector of length 333, recording the peptide IDs. |
pep.pro.name |
a character matrix consisting of 15579 rows and 2 columns. The first column is a vector of mouse protein IDs (IPI numbers), while the second column gives the names of the peptides matching to the mouse proteins in the first column. |
run.group.info |
a data frame consiting of 2 rows and 2 columns, which indicates the case status and the sample size of each group. |
Whiteaker, J. R., Zhang, H., Zhao, L., Wang, P., Kelly-Spratt, K. S., Ivey, R. G., Piening, B. D., Feng, L., Kasarda, E., Gurley, K. E., Eng, J. K., Chodosh, L. A., Kemp, C. J., McIntosh, M. W., Paulovich, A. G (2007) Integrated Pipeline for Mass Spectrometry-Based Discovery and Confirmation of Biomarkers Demonstrated in a Mouse Model of Breast Cancer. J. Proteome Res., 6(10); 3962-3975.
Wang, P., Liu, Y., McIntosh, M. W., Paulovich, A. G (2008) Significant analysis for comparative proteomics studies using label free LC-MS/MS experiments.
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