SCBiclust: Identifies Mean, Variance, and Hierarchically Clustered Biclusters

Identifies a bicluster, a submatrix of the data such that the features and observations within the submatrix differ from those not contained in submatrix, using a two-step method. In the first step, observations in the bicluster are identified to maximize the sum of weighted between cluster feature differences. The method is described in Helgeson et al. (2020) <doi:10.1111/biom.13136>. 'SCBiclust' can be used to identify biclusters which differ based on feature means, feature variances, or more general differences.

Getting started

Package details

AuthorErika S. Helgeson, Qian Liu, Guanhua Chen, Michael R. Kosorok , and Eric Bair
MaintainerErika S. Helgeson <helge@umn.edu>
LicenseGPL (>= 2)
Version1.0.1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("SCBiclust")

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SCBiclust documentation built on June 10, 2022, 1:06 a.m.