SCINA: A Semi-Supervised Category Identification and Assignment Tool

An automatic cell type detection and assignment algorithm for single cell RNA-Seq and Cytof/FACS data. 'SCINA' is capable of assigning cell type identities to a pool of cells profiled by scRNA-Seq or Cytof/FACS data with prior knowledge of markers, such as genes and protein symbols that are highly or lowly expressed in each category.

Getting started

Package details

AuthorZe Zhang
MaintainerZe Zhang <[email protected]>
LicenseGPL-2
Version1.0.1
URL http://lce.biohpc.swmed.edu/scina/ https://github.com/jcao89757/SCINA
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("SCINA")

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SCINA documentation built on Oct. 13, 2018, 9:03 a.m.