select_common_genes: select_common_genes

In SCOPRO: Score Projection Between in 'Vivo' and in 'Vitro' Datasets

select_common_genes

Description

select_common_genes

Usage

select_common_genes(
  SCOPRO_output,
  marker_stages,
  selected_stages,
  name_vivo,
  cluster_vitro,
  name_vitro
)

Arguments

SCOPRO_output	output given by function SCOPRO
marker_stages	Second element of the list given as output by the function select_top_markers
selected_stages	In vivo stages for which the markers where computed with the function select_top_markers
name_vivo	name of the in vivo stage on which SCOPRO is run
cluster_vitro	cluster for in vitro dataset
name_vitro	name of the in vitro stage for which we want to know the conserved markers with the name_vivo stage

Value

Character vector with the names of the conserved markers of name_vivo stage in the name_vitro stage

Author(s)

Gabriele Lubatti [e-mail]

SCOPRO documentation built on Aug. 23, 2022, 9:05 a.m.