SIfEK: Statistical Inference for Enzyme Kinetics

Functions for estimating catalytic constant and Michaelis-Menten constant (MM constant) of stochastic Michaelis-Menten enzyme kinetics model are provided. The likelihood functions based on stochastic simulation approximation (SSA), diffusion approximation (DA), and Gaussian processes (GP) are provided to construct posterior functions for the Bayesian estimation. All functions utilize Markov Chain Monte Carlo (MCMC) methods with Metropolis- Hastings algorithm with random walk chain and robust adaptive Metropolis-Hastings algorithm based on Bayesian framework.

Getting started

Package details

AuthorDonghyun Ra, Kyunghoon Kim, Boseung Choi
MaintainerDonghyun Ra <[email protected]>
LicenseGPL-3
Version0.1.0
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("SIfEK")

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SIfEK documentation built on May 1, 2019, 9:11 p.m.