Description Usage Arguments Value Examples
Function 'gene2cellsummary' is a generic function used to produce result summaries of the immune cells driven by a somatic mutation.
1 | gene2cellsummary(gene, method = "xCell", mutcell)
|
gene |
Somatic mutant gene name |
method |
Method must be one of "xCell","ssGSEA" and "CIBERSORT". |
mutcell |
The result of 'mutcorcell' funtion. |
A matrix shows the short name, full name, pvalue, fdr, cell responses(up or down) of the cells driven by a somatic mutation.
1 2 3 4 5 | # get the result of `mutcorcell` funtion.
mutcell<-GetExampleData("mutcell")
# perform the function gene2cellsummary
genecellsummary<-gene2cellsummary(gene="TP53",mutcell=mutcell)
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