Man pages for SMITIDvisu
Visualize Data for Host and Viral Population from 'SMITIDstruct' using 'HTMLwidgets'

createRainbowColorscreateRainbowColors Create a list of colors for each value v
demo.SMITIDvisu.rundemo.SMITIDvisu.run
df2geojsondf2geojson
hostlineA host infomation over time
mapttmaptt
mapttProxymapttProxy
mapttSelectHostmapttSelectHost
mstComputecompute the minimum spanning tree
mstVariantmstVariant
mstVariantProxymstVariantProxy
SMITIDvisu-packageVisualize Data for Host and Viral Population from...
SMITIDvisu-shinyShiny bindings for visualisation widgets
stA SMITIDstruct package variable.
st.dist113_2Distance matrix of observed variants sequences of a host 113...
st.dist113_allDistance matrix of observed variants sequences of a host 113...
st.listTimeProp113List of variants ID with subvector for time and value.
st.prop113_2Variants proportions and count for host 113 at time 2 from...
st.prop113_allVariants proportions and count for an host 113 at time 2, 3...
timeLinetimeLine
timeLineProxytimeLineProxy get an instance of a timeline
transmissionTreetransmissionTree
transmissionTreeProxytransmissionTreeProxy
tt.edgesPathogen link over the time
tt.eventsData.frame of hosts events information by time. Fake data.
tt.nodesHost list with there status over the time.
updatemstVariantupdatemstVariant
updateTimeLineupdateTimeLine
updateTransmissionTreeupdateTransmissionTree
SMITIDvisu documentation built on Feb. 8, 2021, 9:06 a.m.