f186: Descriptions of cells

In SOD: SOD for multidimensional scaling.

Description

This data set provides descriptions of 874 cells obtained by microscopic analysis of cells carrying a dox inducible EGFP-Etv2 fusion transcription factor.
There are 21 columns indicating:

• dox: whether EGFP-Etv2 was induced by dox (1) or not (0).

• time: time of induction.

• image: an identifier of the image set from which the data row was obtained.

• cell: an identifier for the cell.

• c_area: areas of cells.

• n_area: area of cell nuclei.

• Fli1, Cdh5, Flk1, Etv2, Pdgfra, Snail1, FP (false positives). Densities of the indicated transcripts (i.e. transcript no / cell area).

• n_Fli1, n_Cdh5, n_Flk1, n_Etv2, n_Pdgfra, n_Snail1, n_FP. The number of sites of active transcription for the indicated transcripts.

• p_Etv2. The amount of nuclear EGFP-Etv2 protein estimated from direct EGFP fluorescence.

The f186 name is the experimental identifier and is used here to make the data source easy to trace.

Usage

data(f186)

Format

A dataframe containing 876 rows and 21 columns.

Source

Unpublished experimental data from the author of this package (Martin Jakt)

SOD documentation built on May 30, 2017, 2:03 a.m.