SPA3G: SPA3G: R package for the method of Li and Cui (2012)

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The package implements the model-based kernel machine method for detecting gene-centric gene-gene interactions of Li and Cui (2012).

Author
Shaoyu Li and Yuehua Cui
Date of publication
2012-03-23 06:56:29
Maintainer
ORPHANED
License
GPL (>= 3)
Version
1.0

View on CRAN

Man pages

KERNEL
Calculate Kernel Matrix
PROJECT
Column-wise Mean Centered
Score.Test.Interact
Implement the gene-centric gene-gene interaction effect test...
Score.Test.Overall
Implement the overall genetic effect test for H0:
SPA
run SPA
SPA3G-package
SPA3G
SPA.example
An example data set
TRACE
Returns trace of a square matrix
TT
Returns the trace of the product of two matrices
WEIGHT_maf
Returns minor allele frequency based weights

Files in this package

SPA3G
SPA3G/NAMESPACE
SPA3G/data
SPA3G/data/SPA.example.rda
SPA3G/R
SPA3G/R/WEIGHT_maf.R
SPA3G/R/SPA.R
SPA3G/R/TT.R
SPA3G/R/TRACE.R
SPA3G/R/PROJECT.R
SPA3G/R/KERNEL.R
SPA3G/R/Score.Test.Interact.R
SPA3G/R/Score.Test.Overall.R
SPA3G/MD5
SPA3G/DESCRIPTION
SPA3G/man
SPA3G/man/Score.Test.Overall.Rd
SPA3G/man/TRACE.Rd
SPA3G/man/Score.Test.Interact.Rd
SPA3G/man/SPA.example.Rd
SPA3G/man/SPA.Rd
SPA3G/man/WEIGHT_maf.Rd
SPA3G/man/KERNEL.Rd
SPA3G/man/PROJECT.Rd
SPA3G/man/TT.Rd
SPA3G/man/SPA3G-package.Rd