SPECIES: Statistical package for species richness estimation

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SPECIES is an R package for estimation of species richness or diversity.

Author
Ji-Ping Wang, <jzwang@northwestern.edu>
Date of publication
2011-04-24 20:26:06
Maintainer
Ji-Ping Wang <jzwang@northwestern.edu>
License
GPL-2
Version
1.0

View on CRAN

Man pages

butterfly
Fisher's butterfly data
chao1984
Lower-bound estimator for species richness
ChaoBunge
Coverage-duplication estimator for species richness
ChaoLee1992
Coverage-based estimators for species richness
cottontail
Cottontail data
EST
EST data
insects
Insects data
jackknife
Jackknife estimator for the species richness
microbial
Microbial species data
pcg
Poisson-compound Gamma estimator for the species richness
pnpmle
Penalized conditional NPML estimator for species richness
SPECIES.package
An R pacakge for species richness estimation
traffic
Traffic data
unpmle
Unconditional NPML estimator for the SPECIES number

Files in this package

SPECIES
SPECIES/data
SPECIES/data/butterfly.rda
SPECIES/data/cottontail.rda
SPECIES/data/EST.rda
SPECIES/data/insects.rda
SPECIES/data/microbial.rda
SPECIES/data/traffic.rda
SPECIES/DESCRIPTION
SPECIES/inst
SPECIES/inst/CITATION
SPECIES/man
SPECIES/man/butterfly.Rd
SPECIES/man/chao1984.Rd
SPECIES/man/ChaoBunge.Rd
SPECIES/man/ChaoLee1992.Rd
SPECIES/man/cottontail.Rd
SPECIES/man/EST.Rd
SPECIES/man/insects.Rd
SPECIES/man/jackknife.Rd
SPECIES/man/microbial.Rd
SPECIES/man/pcg.Rd
SPECIES/man/pnpmle.Rd
SPECIES/man/SPECIES.package.Rd
SPECIES/man/traffic.Rd
SPECIES/man/unpmle.Rd
SPECIES/NAMESPACE
SPECIES/R
SPECIES/R/chao1984.R
SPECIES/R/ChaoBunge.R
SPECIES/R/ChaoLee1992.R
SPECIES/R/common.R
SPECIES/R/jackknife.R
SPECIES/R/pcg.R
SPECIES/R/pnpmle.R
SPECIES/R/unpmle.R
SPECIES/src
SPECIES/src/norrispollock.f90
SPECIES/src/pnpmle.f90
SPECIES/src/PPCG.f90
SPECIES/src/shared.f90
SPECIES/src/WLunpmle.f90