plotDirectClass: A plotting function for the performance (Accuracy) of direct...
In SPreFuGED: Selecting a Predictive Function for a Given Gene Expression Data

Description Usage Arguments Value Author(s) References See Also Examples

This function produces boxplots of the expected accuracies of each classification function from call to directClass.

1	plotDirectClass(restDirectClass)

restDirectClass

an object returned by directClass.

A plot of classification funcions and their expected accuracies

Victor Lih Jong

Jong VL, Novianti PW, Roes KCB & Eijkemans MJC. Selecting a classification function for class prediction with gene expression data. Bioinformatics (2016) 32(12): 1814-1822;

covMat, generateGED and directClass

#Let us use simulated data build the 10 classification functions
myCov<-covMat(pAll=100, lambda=2, corrDE=0.75, sigma=0.25);
myData<-generateGED(covAll=myCov, nTrain=30, nTest=10);
myClassResultsSimulatedData<-directClass(data=myData); #Takes roughly 60 Sec
plotDirectClass(myClassResultsSimulatedData);