plotDirectClass: A plotting function for the performance (Accuracy) of direct...

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/plotDirectClass.R

Description

This function produces boxplots of the expected accuracies of each classification function from call to directClass.

Usage

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plotDirectClass(restDirectClass)

Arguments

restDirectClass

an object returned by directClass.

Value

A plot of classification funcions and their expected accuracies

Author(s)

Victor Lih Jong

References

Jong VL, Novianti PW, Roes KCB & Eijkemans MJC. Selecting a classification function for class prediction with gene expression data. Bioinformatics (2016) 32(12): 1814-1822;

See Also

covMat, generateGED and directClass

Examples

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#Let us use simulated data build the 10 classification functions
myCov<-covMat(pAll=100, lambda=2, corrDE=0.75, sigma=0.25);
myData<-generateGED(covAll=myCov, nTrain=30, nTest=10);
myClassResultsSimulatedData<-directClass(data=myData); #Takes roughly 60 Sec
plotDirectClass(myClassResultsSimulatedData);

SPreFuGED documentation built on May 30, 2017, 12:50 a.m.