generate_searchable_links: generate_searchable_links

Description Usage Arguments Value Author(s)

View source: R/generate_searchable_links.R

Description

A function serving as the core of the make_circos_links function. Takes a data frame containing a single lineage, and generates a links data frame containing all possible combinations of that lineage.

Usage

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generate_searchable_links(df, chromosome_grouping, band_grouping, link_grouping,
  start_position, end_position)

Arguments

df

A data frame containing all sub-lineages from the same lineageID

chromosome_grouping

A column defining the circos chromosomes. Passed as column index or "column name".

band_grouping

A column defining the circos chromosome bands. Passed as column index or "column name".

link_grouping

A column defining the circos linkage IDs. Passed as column index or "column name".

start_position

A column defining the start positions of the linkage ID.

end_position

A column defining the end positions of the linkage ID.

Value

Returns a data frame in a pre-"circos links" format for later use within the 'make_circos_links' function.

Author(s)

Matthew Woodruff, Emory University


SanzCircos documentation built on May 1, 2019, 7:55 p.m.