Description Usage Arguments Value Author(s)
View source: R/generate_searchable_links.R
A function serving as the core of the make_circos_links function. Takes a data frame containing a single lineage, and generates a links data frame containing all possible combinations of that lineage.
1 2 | generate_searchable_links(df, chromosome_grouping, band_grouping, link_grouping,
start_position, end_position)
|
df |
A data frame containing all sub-lineages from the same lineageID |
chromosome_grouping |
A column defining the circos chromosomes. Passed as column index or "column name". |
band_grouping |
A column defining the circos chromosome bands. Passed as column index or "column name". |
link_grouping |
A column defining the circos linkage IDs. Passed as column index or "column name". |
start_position |
A column defining the start positions of the linkage ID. |
end_position |
A column defining the end positions of the linkage ID. |
Returns a data frame in a pre-"circos links" format for later use within the 'make_circos_links' function.
Matthew Woodruff, Emory University
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