generate_searchable_links: generate_searchable_links

In SanzCircos: Functions for Creating 'Circos' Files

Description

A function serving as the core of the make_circos_links function. Takes a data frame containing a single lineage, and generates a links data frame containing all possible combinations of that lineage.

Usage

generate_searchable_links(df, chromosome_grouping, band_grouping, link_grouping,
  start_position, end_position)

Arguments

df	A data frame containing all sub-lineages from the same lineageID
chromosome_grouping	A column defining the circos chromosomes. Passed as column index or "column name".
band_grouping	A column defining the circos chromosome bands. Passed as column index or "column name".
link_grouping	A column defining the circos linkage IDs. Passed as column index or "column name".
start_position	A column defining the start positions of the linkage ID.
end_position	A column defining the end positions of the linkage ID.

Value

Returns a data frame in a pre-"circos links" format for later use within the 'make_circos_links' function.

Author(s)

Matthew Woodruff, Emory University

SanzCircos documentation built on May 1, 2019, 7:55 p.m.