SegCorr: Detecting Correlated Genomic Regions

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Performs correlation matrix segmentation and applies a test procedure to detect highly correlated regions in gene expression.

Author
Eleni Ioanna Delatola, Emilie Lebarbier, Tristan Mary-Huard, Francois Radvanyi, Stephane Robin, Jennifer Wong
Date of publication
2015-11-04 17:33:45
Maintainer
Eleni Ioanna Delatola <eldelatola@yahoo.gr>
License
GPL-2
Version
1.1

View on CRAN

Man pages

CNV_correction
Corrects Gene Expression for CNV
EXP_raw
Simulated Gene Expression
SegCorr
Performs CNV Correction and Correlation Matrix Segmentation
SegCorr-package
Detecting Correlated Genomic Regions
segmentation
Correlation Matrix Segmentation
segmented_signal
Mean Segmentation
SNP
Simulated SNP signal

Files in this package

SegCorr
SegCorr/NAMESPACE
SegCorr/data
SegCorr/data/EXP_raw.txt
SegCorr/data/SNP.txt
SegCorr/R
SegCorr/R/SegCorr.R
SegCorr/R/CNV_correction.R
SegCorr/R/segmentation.R
SegCorr/R/segmented_signal.R
SegCorr/MD5
SegCorr/DESCRIPTION
SegCorr/man
SegCorr/man/segmentation.Rd
SegCorr/man/EXP_raw.Rd
SegCorr/man/segmented_signal.Rd
SegCorr/man/SegCorr-package.Rd
SegCorr/man/SNP.Rd
SegCorr/man/SegCorr.Rd
SegCorr/man/CNV_correction.Rd