reference: RNA-seq reference dataset

In SeqNet: Generate RNA-Seq Data from Gene-Gene Association Networks

Description

The reference is a breast invasive carcinoma dataset containing gene expression profiles generated by The Cancer Genome Atlas (TCGA) and downloaded using the LinkedOmics portal. The dataset contains 1093 samples and 15944 genes. The reference is a list containing a data frame of the expression data and a data frame of estimated ZINB parameters for each expression profile.

Usage

reference

Format

A list containing two data frames:

$rnaseq

A 1093 by 15944 data frame containing the raw RNA-seq expression counts

$params

A 3 by 15944 data frame containing the estimated ZINB parameters for each expression profile

Source

http://www.linkedomics.org/data_download/TCGA-BRCA/

SeqNet documentation built on July 9, 2021, 9:08 a.m.