SigTree: Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree

Provides tools to identify and visualize branches in a phylogenetic tree that are significantly responsive to some intervention, taking as primary inputs a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip (OTU) labels and p-values.

Install the latest version of this package by entering the following in R:
install.packages("SigTree")
AuthorJohn R. Stevens and Todd R. Jones
Date of publication2017-02-08 01:28:16
MaintainerJohn R. Stevens <john.r.stevens@usu.edu>
LicenseGPL-3
Version1.10.5

View on CRAN

Files

inst
inst/sample
inst/sample/sample.csv
inst/sample/sample.tre
inst/sample/singletonsample.tre
inst/CITATION
inst/doc
inst/doc/SigTree.Rnw
inst/doc/SigTree.R
inst/doc/SigTree.pdf
src
src/SigTree.c
NAMESPACE
NEWS
R
R/p2.p1.R R/SigTree.other.R R/export.inherit.R R/plotSigTree.R R/adonis.tree.R R/export.figtree.R
vignettes
vignettes/sigsampleFigTree.jpg
vignettes/SigTree.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/adonis.tree.Rd man/SigTree.other.Rd man/export.figtree.Rd man/p2.p1.Rd man/plotSigTree.Rd man/export.inherit.Rd man/SigTree-package.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.