SigTree: Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree

Provides tools to identify and visualize branches in a phylogenetic tree that are significantly responsive to some intervention, taking as primary inputs a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip (OTU) labels and p-values.

AuthorJohn R. Stevens and Todd R. Jones
Date of publication2017-02-08 01:28:16
MaintainerJohn R. Stevens <john.r.stevens@usu.edu>
LicenseGPL-3
Version1.10.5

View on CRAN

Files

SigTree
SigTree/inst
SigTree/inst/sample
SigTree/inst/sample/sample.csv
SigTree/inst/sample/sample.tre
SigTree/inst/sample/singletonsample.tre
SigTree/inst/CITATION
SigTree/inst/doc
SigTree/inst/doc/SigTree.Rnw
SigTree/inst/doc/SigTree.R
SigTree/inst/doc/SigTree.pdf
SigTree/src
SigTree/src/SigTree.c
SigTree/NAMESPACE
SigTree/NEWS
SigTree/R
SigTree/R/p2.p1.R SigTree/R/SigTree.other.R SigTree/R/export.inherit.R SigTree/R/plotSigTree.R SigTree/R/adonis.tree.R SigTree/R/export.figtree.R
SigTree/vignettes
SigTree/vignettes/sigsampleFigTree.jpg
SigTree/vignettes/SigTree.Rnw
SigTree/MD5
SigTree/build
SigTree/build/vignette.rds
SigTree/DESCRIPTION
SigTree/man
SigTree/man/adonis.tree.Rd SigTree/man/SigTree.other.Rd SigTree/man/export.figtree.Rd SigTree/man/p2.p1.Rd SigTree/man/plotSigTree.Rd SigTree/man/export.inherit.Rd SigTree/man/SigTree-package.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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