tests/testthat/_snaps/ABCSMC.md

In SimBIID: Simulation-Based Inference Methods for Infectious Disease Models

ABCSMC works

An object of class: 'ABCSMC'
Consists of 2 generations with 2 parameters.

Data:
finalsize finaltime 
       30        76

Tolerances:
 Generation finalsize finaltime     ESS
          1        50  50.00000 50.0000
          2        26  21.76687 34.5273

Priors:

 beta ~ G(shape = 10, rate = 10000)
  gamma ~ G(shape = 10, rate = 100)

An object of class: 'ABCSMC'
Consists of 3 generations with 2 parameters.

Data:
finalsize finaltime 
       30        76

Tolerances:
 Generation finalsize finaltime      ESS
          1      50.0  50.00000 50.00000
          2      26.0  21.76687 34.52730
          3      20.5  14.97173 36.39753

Priors:

 beta ~ G(shape = 10, rate = 10000)
  gamma ~ G(shape = 10, rate = 100)

              Mean           SD      ESS
beta  0.0009732063 0.0002064248 36.39753
gamma 0.1039507381 0.0222006929 36.39753

An object of class: 'ABCSMC'
Consists of 2 generations with 2 parameters.

Data:
finalsize finaltime 
       30        76

Tolerances:
 Generation finalsize finaltime      ESS
          1        50        50 50.00000
          2        50        20 38.61119

Priors:

 beta ~ G(shape = 10, rate = 10000)
  gamma ~ G(shape = 10, rate = 100)

An object of class: 'ABCSMC'
Consists of 3 generations with 2 parameters.

Data:
finalsize finaltime 
       30        76

Tolerances:
 Generation finalsize finaltime      ESS
          1        50        50 50.00000
          2        50        20 38.61119
          3        20        15 40.30010

Priors:

 beta ~ G(shape = 10, rate = 10000)
  gamma ~ G(shape = 10, rate = 100)

An object of class: 'ABCSMC'
Consists of 4 generations with 2 parameters.

Data:
finalsize finaltime 
       30        76

Tolerances:
 Generation finalsize finaltime      ESS
          1      50.0  50.00000 50.00000
          2      50.0  20.00000 38.61119
          3      20.0  15.00000 40.30010
          4      18.5  13.20984 42.09562

Priors:

 beta ~ G(shape = 10, rate = 10000)
  gamma ~ G(shape = 10, rate = 100)

SimBIID documentation built on Feb. 4, 2021, 9:07 a.m.