batch: Run a block of code as part of a batch

In SimEngine: A Modular Framework for Statistical Simulations in R

Run a block of code as part of a batch

Description

This function is designed to be used within a simulation script to leverage "replicate batches". This is useful if you want to share data or objects between simulation replicates. Essentially, it allows you to take your simulation replicates and divide them into "batches"; all replicates in a given batch will then share a single set of objects. The most common use case for this is if you have a simulation that involves generating one dataset, analyzing it using multiple methods, and then repeating this a number of times. See https://avi-kenny.github.io/SimEngine/advanced-usage/#using-the-batch-function for a thorough overview of how this function is used.

Usage

batch(code)

Arguments

code	A block of code enclosed by curly braces ; see examples.

Examples

sim <- new_sim()
create_data <- function(n, mu) { rnorm(n=n, mean=mu) }
est_mean <- function(dat, type) {
  if (type=="est_mean") { return(mean(dat)) }
  if (type=="est_median") { return(median(dat)) }
}
sim %<>% set_levels(n=c(10,100), mu=c(3,5), est=c("est_mean","est_median"))
sim %<>% set_config(
  num_sim = 2,
  batch_levels = c("n","mu"),
  return_batch_id = TRUE
)
sim %<>% set_script(function() {
  batch({
    dat <- create_data(n=L$n, mu=L$mu)
  })
  mu_hat <- est_mean(dat=dat, type=L$est)
  return(list(
    "mu_hat" = round(mu_hat,2),
    "dat_1" = round(dat[1],2)
  ))
})
sim %<>% run()
sim$results[order(sim$results$batch_id),]

SimEngine documentation built on Oct. 27, 2023, 1:07 a.m.