SimRAD: Simulations to Predict the Number of RAD and GBS Loci
Version 0.96

Provides a number of functions to simulate restriction enzyme digestion, library construction and fragments size selection to predict the number of loci expected from most of the Restriction site Associated DNA (RAD) and Genotyping By Sequencing (GBS) approaches. SimRAD estimates the number of loci expected from a particular genome depending on the protocol type and parameters allowing to assess feasibility, multiplexing capacity and the amount of sequencing required.

Package details

AuthorOlivier Lepais [aut, cre], Jason Weir [aut]
Date of publication2016-01-06 17:22:25
MaintainerOlivier Lepais <olepais@st-pee.inra.fr>
LicenseGPL-2
Version0.96
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("SimRAD")

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SimRAD documentation built on May 29, 2017, 1:14 p.m.