SimRAD: Simulations to Predict the Number of RAD and GBS Loci

Provides a number of functions to simulate restriction enzyme digestion, library construction and fragments size selection to predict the number of loci expected from most of the Restriction site Associated DNA (RAD) and Genotyping By Sequencing (GBS) approaches. SimRAD estimates the number of loci expected from a particular genome depending on the protocol type and parameters allowing to assess feasibility, multiplexing capacity and the amount of sequencing required.

Install the latest version of this package by entering the following in R:
install.packages("SimRAD")
AuthorOlivier Lepais [aut, cre], Jason Weir [aut]
Date of publication2016-01-06 17:22:25
MaintainerOlivier Lepais <olepais@st-pee.inra.fr>
LicenseGPL-2
Version0.96

View on CRAN

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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