SmoothHazard: Fitting illness-death model for interval-censored data

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SmoothHazard is a package for fitting illness-death (and survival) model with possibly interval-censored data for transition toward transient state. Left-truncated and right-censored data are also allowed. Proportional intensities regression models allow for covariates on each of the 3 transitions. We use either a parametric approach with Weibull baseline intensities or a semi-parametric approach with M-splines approximation of baseline intensities in order to obtain smooth estimates. Estimation of parameters is conducted by likelihood maximization in the parametric approach or penalized likelihood maximization in the semi-parametric approach.

Author
Celia Touraine, Pierre Joly, Thomas A. Gerds
Date of publication
2014-09-19 00:58:57
Maintainer
Thomas Alexander Gerds <tag@biostat.ku.dk>
License
GPL (>= 2)
Version
1.2.3

View on CRAN

Man pages

idm
Fit an illness-death model
idmModel
Generate illness-death model objects
lifexpect
Predictions of life expectancies from an illness-death.
Paq1000
Paquid data set
plot.idm
Plot method for an illness-death model
plot.shr
Plot method for a survival model.
predict.idm
Predictions for an illness-death model using either a...
print.idm
Print method for 'idm' objects
print.shr
Print method for 'shrSplines' objects
shr
Fit a survival model
sim.idmModel
Simulate illness-death model data
simulateIDM
Sample illness-death model data
summary.idm
Summary of a fitted illness-death model
summary.shr
Summary of a fitted survival model using a penalized...
testdata
Data set for survival models: right-censored and...

Files in this package

SmoothHazard
SmoothHazard/src
SmoothHazard/src/idmPlLikelihood2.f90
SmoothHazard/src/Makevars
SmoothHazard/src/tri.f90
SmoothHazard/src/survPlLikelihood.f90
SmoothHazard/src/recKappa.f90
SmoothHazard/src/estimv.f90
SmoothHazard/src/survPl.f90
SmoothHazard/src/survLikelihood.f90
SmoothHazard/src/fonct.f90
SmoothHazard/src/useSurv.f90
SmoothHazard/src/qgauss1.f90
SmoothHazard/src/distance.f90
SmoothHazard/src/survWeib.f90
SmoothHazard/src/commun.f90
SmoothHazard/src/idmPl.f90
SmoothHazard/src/bgos.f90
SmoothHazard/src/idmPlLikelihood.f90
SmoothHazard/src/idmPlLikelihood0.f90
SmoothHazard/src/idmWeib.f90
SmoothHazard/src/optim.f90
SmoothHazard/src/Makevars.win
SmoothHazard/src/idmLikelihood.f90
SmoothHazard/NAMESPACE
SmoothHazard/data
SmoothHazard/data/Paq1000.txt.gz
SmoothHazard/data/testdata.txt.gz
SmoothHazard/R
SmoothHazard/R/plot.idm.R
SmoothHazard/R/summary.shr.R
SmoothHazard/R/shr.R
SmoothHazard/R/summary.idm.R
SmoothHazard/R/print.idm.R
SmoothHazard/R/SmoothHazard-package.R
SmoothHazard/R/idm.R
SmoothHazard/R/simulateIDM.R
SmoothHazard/R/plot.shr.R
SmoothHazard/R/predict.idm.R
SmoothHazard/R/print.shr.R
SmoothHazard/R/lifexpect.R
SmoothHazard/MD5
SmoothHazard/DESCRIPTION
SmoothHazard/man
SmoothHazard/man/print.shr.Rd
SmoothHazard/man/shr.Rd
SmoothHazard/man/Paq1000.Rd
SmoothHazard/man/summary.shr.Rd
SmoothHazard/man/idm.Rd
SmoothHazard/man/summary.idm.Rd
SmoothHazard/man/plot.shr.Rd
SmoothHazard/man/sim.idmModel.Rd
SmoothHazard/man/testdata.Rd
SmoothHazard/man/plot.idm.Rd
SmoothHazard/man/simulateIDM.Rd
SmoothHazard/man/print.idm.Rd
SmoothHazard/man/lifexpect.Rd
SmoothHazard/man/idmModel.Rd
SmoothHazard/man/predict.idm.Rd