SoilR: Models of Soil Organic Matter Decomposition
Version 1.1-23

This package contains functions for modeling Soil Organic Matter decomposition in terrestrial ecosystems.

AuthorCarlos A. Sierra <csierra@bgc-jena.mpg.de>, Markus Mueller <mamueller@bgc-jena.mpg.de>
Date of publication2014-04-30 18:53:34
MaintainerMarkus Mueller <mamueller@bgc-jena.mpg.de>
LicenseGPL-3
Version1.1-23
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("SoilR")

Popular man pages

125: Effects of temperature on decomposition rates according to a...
131: Effects of moisture on decomposition rates according to the...
18: generic constructor
23: constructor
40: pass through constructor
5: Converts from Delta14C to Absolute Fraction Modern
manMan/C14Atm_NH: Post-bomb atmospheric 14C fraction
See all...

All man pages Function index File listing

Man pages

1: ~~ Methods for Function 'AbsoluteFractionModern' ~~
10: constructor
100: Implementation of a two-pool C14 model with series structure
101: Implementation of the Yasso07 model
102: Implementation of the Yasso model.
103: ~~ Methods for Function 'as.character' ~~
104: creates a character representation of the object in question
105: convert BoundInFlux Objects to something printable.
106: convert TimeMap Objects to something printable.
107: ~~ Methods for Function 'availableParticleProperties' ~~
108: ~~ Methods for Function 'availableParticleSets' ~~
109: Implementation of the microbial model Bacwave (bacterial...
11: constructor
110: Binding of pre- and post-bomb Delta14C curves
111: ~~ Methods for Function 'computeResults' ~~
112: deSolve lsoda wrapper
113: Soil CO2 efflux from incubation experiments
114: Effects of temperature on decomposition rates according the...
115: Effects of temperature on decomposition rates according the...
116: Effects of temperature on decomposition rates according the...
117: Effects of temperature on decomposition rates according to...
118: Effects of temperature on decomposition rates according to...
119: Effects of temperature on decomposition rates according to...
12: constructor
120: Effects of temperature on decomposition rates according to a...
121: Effects of temperature on decomposition rates according to a...
122: Effects of temperature on decomposition rates according to a...
123: Effects of temperature on decomposition rates according to...
124: Effects of temperature on decomposition rates according to...
125: Effects of temperature on decomposition rates according to a...
126: Effects of moisture on decomposition rates according to the...
127: Effects of moisture on decomposition rates according to the...
128: Effects of moisture on decomposition rates according to the...
129: Effects of moisture on decomposition rates according to the...
13: constructor
130: Effects of moisture on decomposition rates according to the...
131: Effects of moisture on decomposition rates according to the...
132: Effects of moisture on decomposition rates according to the...
133: Effects of moisture on decomposition rates according to the...
134: Effects of moisture on decomposition rates according to the...
135: Effects of moisture on decomposition rates according to the...
136: ~~ Methods for Function 'getAccumulatedRelease' ~~
137: Calculates the accumulated carbon release from the pools as a...
138: time integrals of release fluxes per pool
139: ~~ Methods for Function 'getC' ~~
14: constructor
140: Calculates the C content of the pools
141: ~~ Methods for Function 'getC14' ~~
142: Calculates the mass of radiocarbon (14C fraction times C...
143: getC14 method Model 14
144: getC method Model
145: ~~ Methods for Function 'getDecompOp' ~~
146: ~~ Methods for Function 'getDotOut' ~~
147: ~~ Methods for Function 'getF14' ~~
148: Calculates the 14C fraction of all pools
149: ~~ Methods for Function 'getF14C' ~~
15: constructor
150: Calculates the average radiocarbon fraction weighted by the...
151: read access to the models F14C variable
152: ~~ Methods for Function 'getF14R' ~~
153: Calculates the average radiocarbon fraction weighted by the...
154: average radiocarbon fraction weighted by carbonrelease
155: radiocarbon
156: ~~ Methods for Function 'getFormat' ~~
157: extract the format string
158: ~~ Methods for Function 'getFunctionDefinition' ~~
159: getFunctionDefinition
16: Class '"BoundInFlux"'
160: function definition
161: getFunctionDefinition method BoundInFlux
162: getFunctionDefinition method BoundLinDecompOp
163: creates a constant timedependent function and returns it
164: getFunctionDefinition method DecompositionOperator
165: getFunctionDefinition method TimeMap
166: ~~ Methods for Function 'getInFluxes' ~~
167: ~~ Methods for Function 'getInitialValues' ~~
168: ~~ Methods for Function 'getMeanTransitTime' ~~
169: Access to the mean transit time
17: ~~ Methods for Function 'BoundInFlux' ~~
170: compute the mean transit time
171: ~~ Methods for Function 'getNumberOfPools' ~~
172: ~~ Methods for Function 'getOutputFluxes' ~~
173: ~~ Methods for Function 'getOutputReceivers' ~~
174: ~~ Methods for Function 'getParticleMonteCarloSimulator' ~~
175: ~~ Methods for Function 'getReleaseFlux' ~~
176: Calculates the release of C from each pool
177: ~~ Methods for Function 'getReleaseFlux14' ~~
178: Calculates the mass of radiocarbon in the release flux (14C...
179: 14C respiration rate for all pools
18: generic constructor
180: get the release rate for all pools
181: ~~ Methods for Function 'getTimeRange' ~~
182: getTimeRange
183: ask for the boundaries of the underlying time interval
184: time domain of the function
185: ask for the boundaries of the underlying time interval
186: return an (infinite) time range since the operator is...
187: ask for the boundaries of the underlying time interval
188: ask for the boundaries of the underlying time interval
189: ~~ Methods for Function 'getTimes' ~~
19: convert to BoundInFlux
190: Extracts the times argument
191: getTimes method Model
192: ~~ Methods for Function 'getTransferCoefficients' ~~
193: ~~ Methods for Function 'getTransferMatrix' ~~
194: ~~ Methods for Function 'getTransitTimeDistributionDensity'...
195: methods for transit time distributions
196: compute the TransitTimeDistributionDensity
197: ~~ Methods for Function 'getValues' ~~
198: ~~ Methods for Function 'initialize' ~~
199: internal constructor (new)
2: ~~ Methods for Function...
20: constructor
200: internal constructor
201: initialize called by (new)
202: internal constructor
203: initialize called by (new)
204: internal constructor for Model objects
205: An internal constructor for 'Model_14' objects not...
206: initialize called by (new)
207: Add lines with the output of 'getC14', 'getC', or...
208: ~~ Methods for Function 'plot' ~~
209: Plots the output of 'getC14' for each pool over time
21: constructor
210: Plots the output of 'getC' or 'getReleaseFlux' for each pool...
211: plot method Model
212: ~~ Methods for Function 'print' ~~
213: print method Model
214: ~~ Methods for Function 'show' ~~
215: show method Model
216: ~~ Methods for Function 'summary' ~~
217: summary method Model
218: Estimation of the turnover time from a soil radiocarbon...
219: ~~ Methods for Function '$' ~~
22: constructor
220: ~~ Methods for Function '[' ~~
221: ~~ Methods for Function '[[' ~~
222: ~~ Methods for Function '[[<-' ~~
223: (experimenta) partially overload [ ] for models
23: constructor
24: Class '"BoundLinDecompOp"'
25: ~~ Methods for Function 'BoundLinDecompOp' ~~
26: Generic constructor
27: convert a ConstLinDecompOp to a BoundLinDecompOp
28: create a BoundLinDecompOp from a TimeMap
29: a constructor
3: Converts its argument to an Absolute Fraction Modern...
30: a constructor
31: Atmospheric 14C fraction
32: Post-bomb atmospheric 14C fraction
33: creates an object containing the initial values for the 14C...
34: Class '"ConstLinDecompOp"'
35: ~~ Methods for Function 'ConstLinDecompOp' ~~
36: Generic constructor
37: construct from matric
38: Class '"DecompOp"'
39: ~~ Methods for Function 'DecompOp' ~~
4: Converts from Delta14C to Absolute Fraction Modern
40: pass through constructor
41: creates a BoundLinDecompOp from a TimeMap object
42: creates a ConstanDecompOp from a matrix
43: Class '"DecompositionOperator"'
44: ~~ Methods for Function 'Delta14C' ~~
45: ~~ Methods for Function...
46: Converts its argument from an Absolute Fraction Modern to a...
47: Converts Absolute Fraction Modern values to Delta14C
48: Converts to Delta14C format
49: convert to Absolute Fraction Normal values
5: Converts from Delta14C to Absolute Fraction Modern
50: Implementation of a the six-pool C14 model proposed by...
51: ~~ Methods for Function 'GeneralModel' ~~
52: A general constructor
53: ~~ Methods for Function 'GeneralModel_14' ~~
54: A general constructor
55: a constructor for class Model
56: a constructor for class Model_14
57: a constructor for class Model <- 14
58: a constructor for class Model_ 14
59: a constructor for class Model
6: convert to Absolute Fraction Normal values
60: a constructor for class Model
61: a constructor for class Model
62: Delta14C in soil CO2 efflux from Harvard Forest
63: Atmospheric radiocarbon for the period 1950-2010 from Hua et...
64: Implementation of the Introductory Carbon Balance Model...
65: Class '"InFlux"'
66: ~~ Methods for Function 'InFlux' ~~
67: pass through constructor
68: create a BoundInFlux from a TimeMap object
69: Northern Hemisphere atmospheric radiocarbon for the pre-bomb...
7: Class '"BoundFc"'
70: Atmospheric radiocarbon for the 0-50,000 yr BP period
71: Class '"Model"'
72: ~~ Methods for Function 'Model' ~~
73: A general constructor
74: Class '"Model_14"'
75: ~~ Methods for Function 'Model_14' ~~
76: A general constructor
77: general constructor for class Model
78: Implementation of a one pool model
79: Implementation of a one-pool C14 model
8: ~~ Methods for Function 'BoundFc' ~~
80: ParallelModel
81: helper function to compute respiration coefficients
82: Implementation of the RothCModel
83: Models of Soil Organic Matter Decomposition
84: Implementation of a three pool model with feedback structure
85: Implementation of a three-pool C14 model with feedback...
86: Implementation of a three pool model with parallel structure
87: Implementation of a three-pool C14 model with parallel...
88: Implementation of a three pool model with series structure
89: Implementation of a three-pool C14 model with series...
9: generic constructor
90: Implementation of a 6-pool Michaelis-Menten model
91: Class '"TimeMap"'
92: TimeMap from Dataframe
93: basic constructor of the class TimeMap.
94: Implementation of a two pool model with feedback structure
95: Implementation of a two-pool C14 model with feedback...
96: Implementation of a two-pool Michaelis-Menten model
97: Implementation of a two pool model with parallel structure
98: Implementation of a two-pool C14 model with parallel...
99: Implementation of a two pool model with series structure
manMan/as.character: creates a character representation of the object in question
manMan/C14Atm: Atmospheric 14C fraction
manMan/C14Atm_NH: Post-bomb atmospheric 14C fraction
manMan/eCO2: Soil CO2 efflux from incubation experiments
manMan/HarvardForest14CO2: Delta14C in soil CO2 efflux from Harvard Forest
manMan/Hua2013: Atmospheric radiocarbon for the period 1950-2010 from Hua et...
manMan/IntCal09: Northern Hemisphere atmospheric radiocarbon for the pre-bomb...
manMan/IntCal13: Atmospheric radiocarbon for the 0-50,000 yr BP period

Functions

$,NlModel-method Man page
$-methods Man page
AbsoluteFractionModern,BoundFc-method Man page
AbsoluteFractionModern,ConstFc-method Man page
AbsoluteFractionModern-methods Man page
AbsoluteFractionModern_from_Delta14C Man page
AbsoluteFractionModern_from_Delta14C,matrix-method Man page
AbsoluteFractionModern_from_Delta14C,numeric-method Man page
AbsoluteFractionModern_from_Delta14C-methods Man page
AbsoluteFractionModern_from_Delta14C_method__matrix Man page
AbsoluteFractionModern_from_Delta14C_method__numeric Man page
AbsoluteFractionModern_method__BoundFc Man page
BoundFc Man page
BoundFc,data.frame,missing,missing,missing,character,function-me Man page
BoundFc,data.frame,missing,missing,missing,character,missing-met Man page
BoundFc,data.frame,missing,missing,numeric,character,function-me Man page
BoundFc,data.frame,missing,missing,numeric,character,missing-met Man page
BoundFc,function,numeric,numeric,missing,character,missing-metho Man page
BoundFc,function,numeric,numeric,numeric,character,missing-metho Man page
BoundFc-class Man page
BoundFc-methods Man page
BoundFc_method__data.frame_missing_missing_missing_character_fun Man page
BoundFc_method__data.frame_missing_missing_missing_character_mis Man page
BoundFc_method__data.frame_missing_missing_numeric_character_fun Man page
BoundFc_method__data.frame_missing_missing_numeric_character_mis Man page
BoundFc_method__function_numeric_numeric_missing_character_missi Man page
BoundFc_method__function_numeric_numeric_numeric_character_missi Man page
BoundInFlux Man page
BoundInFlux,TimeMap,missing,missing,missing,missing-method Man page
BoundInFlux,data.frame,missing,missing,missing,missing-method Man page
BoundInFlux,data.frame,missing,missing,numeric,function-method Man page
BoundInFlux,function,numeric,numeric,missing,missing-method Man page
BoundInFlux,function,numeric,numeric,numeric,missing-method Man page
BoundInFlux-class Man page
BoundInFlux-methods Man page
BoundInFlux.new Source code
BoundInFlux_method__TimeMap_missing_missing_missing_missing Man page
BoundInFlux_method__data.frame_missing_missing_missing_missing Man page
BoundInFlux_method__data.frame_missing_missing_numeric_function Man page
BoundInFlux_method__function_numeric_numeric_missing_missing Man page
BoundInFlux_method__function_numeric_numeric_numeric_missing Man page
BoundLinDecompOp Man page
BoundLinDecompOp,ConstLinDecompOp,ANY,ANY,ANY-method Man page
BoundLinDecompOp,TimeMap,missing,missing,missing-method Man page
BoundLinDecompOp,function,numeric,numeric,missing-method Man page
BoundLinDecompOp,function,numeric,numeric,numeric-method Man page
BoundLinDecompOp-class Man page
BoundLinDecompOp-methods Man page
BoundLinDecompOp_method__ConstLinDecompOp Man page
BoundLinDecompOp_method__TimeMap_missing_missing_missing Man page
BoundLinDecompOp_method__function_numeric_numeric_missing Man page
BoundLinDecompOp_method__function_numeric_numeric_numeric Man page
C14Atm Man page Man page
C14Atm_NH Man page Man page
ConstFc Man page Source code
ConstLinDecompOp Man page
ConstLinDecompOp,matrix-method Man page
ConstLinDecompOp-class Man page
ConstLinDecompOp-methods Man page
ConstLinDecompOp_method__matrix Man page
DecompOp,DecompOp-method Man page
DecompOp,TimeMap-method Man page
DecompOp,matrix-method Man page
DecompOp-class Man page
DecompOp-methods Man page
DecompOp_method__DecompOp Man page
DecompOp_method__TimeMap Man page
DecompOp_method__matrix Man page
DecompositionOperator-class Man page
Delta14C,BoundFc-method Man page
Delta14C,ConstFc-method Man page
Delta14C-methods Man page
Delta14C_from_AbsoluteFractionModern Man page
Delta14C_from_AbsoluteFractionModern,matrix-method Man page
Delta14C_from_AbsoluteFractionModern,numeric-method Man page
Delta14C_from_AbsoluteFractionModern-methods Man page
Delta14C_from_AbsoluteFractionModern_method__matrix Man page
Delta14C_from_AbsoluteFractionModern_method__numeric Man page
Delta14C_method__BoundFc Man page
FcAtm.from.Dataframe Source code
GaudinskiModel14 Man page
GeneralModel Man page
GeneralModel,numeric,ANY,numeric-method Man page
GeneralModel-methods Man page
GeneralModel_14 Man page
GeneralModel_14,numeric,ANY,numeric,ANY,ANY,ANY,missing,missing, Man page
GeneralModel_14,numeric,ANY,numeric,ANY,ANY,ANY,missing,numeric, Man page Man page Man page Man page
GeneralModel_14,numeric,ANY,numeric,ANY,ANY,missing,ANY,numeric, Man page
GeneralModel_14-methods Man page
GeneralModel_14_method__numeric_ANY_numeric_ANY_ANY_ANY_missing_ Man page Man page Man page Man page Man page
GeneralModel_14_method__numeric_ANY_numeric_ANY_ANY_missing_ANY_ Man page
GeneralModel_method__numeric_ANY_numeric Man page
HarvardForest14CO2 Man page Man page
Hua2013 Man page Man page
ICBMModel Man page
InFlux,InFlux-method Man page
InFlux,TimeMap-method Man page
InFlux-class Man page
InFlux-methods Man page
InFlux_method__InFlux Man page
InFlux_method__TimeMap Man page
IntCal09 Man page Man page
IntCal13 Man page Man page
MeanAge Source code
MeanAge2 Source code
MeanAge3 Source code
MeanTT Source code
Model Man page
Model,numeric,ANY,numeric-method Man page
Model-class Man page
Model-methods Man page
Model_14 Man page
Model_14,numeric,ANY,numeric,ConstFc,ANY,ANY,numeric,function,lo Man page
Model_14,numeric,ANY,numeric,ConstFc,ANY,ANY,numeric,missing,log Man page
Model_14-class Man page
Model_14-methods Man page
Model_method__numeric_ANY_numeric Man page
NpYdot Source code
OnepModel Man page
OnepModel14 Man page
ParallelModel Man page
RespirationCoefficients Man page Source code
RothCModel Man page
SoilR Man page
SoilR-package Man page
SoilR.F0.new Source code
SoilR.euler Source code
ThreepFeedbackModel Man page
ThreepFeedbackModel14 Man page
ThreepParallelModel Man page
ThreepParallelModel14 Man page
ThreepSeriesModel Man page
ThreepSeriesModel14 Man page
ThreepairMMmodel Man page
TimeMap-class Man page
TimeMap.from.Dataframe Man page Source code
TimeMap.new Man page Source code
TimeMapWarningBoundFc Source code
TimeMapWarningInFluxes Source code
TimeMapWarningOperators Source code
TwopFeedbackModel Man page
TwopFeedbackModel14 Man page
TwopMMmodel Man page
TwopParallelModel Man page
TwopParallelModel14 Man page
TwopSeriesModel Man page
TwopSeriesModel14 Man page
WarningConstFc Source code
Yasso07Model Man page
YassoModel Man page
[,Model,character-method Man page
[,NlModel,character-method Man page
[-methods Man page
[[,MCSim-method Man page
[[-methods Man page
[[<-,MCSim-method Man page
[[<--methods Man page
[_method__Model_character Man page
as.character Man page Man page
as.character,BoundInFlux-method Man page
as.character,MCSim-method Man page
as.character,TimeMap-method Man page
as.character-methods Man page
as.character_method__BoundInFlux Man page
as.character_method__TimeMap Man page
availableParticleProperties,MCSim-method Man page
availableParticleProperties-methods Man page
availableParticleSets,MCSim-method Man page
availableParticleSets-methods Man page
bacwaveModel Man page
bind.C14curves Man page
computeResults,MCSim-method Man page
computeResults,NlModel-method Man page
computeResults-methods Man page
correctnessOfBoundFc Source code
correctnessOfConstFc Source code
correctnessOfDecompOp Source code
correctnessOfModel Source code
correctnessOfModel14 Source code
correctnessOfNlModel Source code
deSolve.lsoda.wrapper Man page Source code
eCO2 Man page Man page
fT.Arrhenius Man page
fT.Century1 Man page
fT.Century2 Man page
fT.Daycent1 Man page
fT.Daycent2 Man page
fT.Demeter Man page
fT.KB Man page
fT.LandT Man page
fT.Q10 Man page
fT.RothC Man page
fT.Standcarb Man page
fT.linear Man page
fW.Candy Man page
fW.Century Man page
fW.Daycent1 Man page
fW.Daycent2 Man page
fW.Demeter Man page
fW.Gompertz Man page
fW.Moyano Man page
fW.RothC Man page
fW.Skopp Man page
fW.Standcarb Man page
fromToSplitter Source code Source code
getAccumulatedRelease Man page
getAccumulatedRelease,Model-method Man page
getAccumulatedRelease-methods Man page
getAccumulatedRelease_method__Model Man page
getC Man page
getC,Model-method Man page
getC,NlModel-method Man page
getC-methods Man page
getC14 Man page
getC14,Model_14-method Man page
getC14-methods Man page
getC14_method__Model_14 Man page
getC_method__Model Man page
getDecompOp,NlModel-method Man page
getDecompOp-methods Man page
getDotOut,TransportDecompositionOperator-method Man page
getDotOut-methods Man page
getF14 Man page
getF14,Model_14-method Man page
getF14-methods Man page
getF14C Man page
getF14C,Model_14-method Man page
getF14C-methods Man page
getF14C_method__Model_14 Man page
getF14R Man page
getF14R,Model_14-method Man page
getF14R-methods Man page
getF14R_method__Model_14 Man page
getF14_method__Model_14 Man page
getFormat,BoundFc-method Man page
getFormat,ConstFc-method Man page
getFormat-methods Man page
getFormat_method__BoundFc Man page
getFunctionDefinition Man page
getFunctionDefinition,BoundFc-method Man page
getFunctionDefinition,BoundInFlux-method Man page
getFunctionDefinition,BoundLinDecompOp-method Man page
getFunctionDefinition,ConstLinDecompOp-method Man page
getFunctionDefinition,DecompositionOperator-method Man page
getFunctionDefinition,TimeMap-method Man page
getFunctionDefinition,TransportDecompositionOperator-method Man page
getFunctionDefinition-methods Man page
getFunctionDefinition_method__BoundFc Man page
getFunctionDefinition_method__BoundInFlux Man page
getFunctionDefinition_method__BoundLinDecompOp Man page
getFunctionDefinition_method__ConstLinDecompOp Man page
getFunctionDefinition_method__DecompositionOperator Man page
getFunctionDefinition_method__TimeMap Man page
getInFluxes,NlModel-method Man page
getInFluxes-methods Man page
getInitialValues,NlModel-method Man page
getInitialValues-methods Man page
getMeanTransitTime Man page
getMeanTransitTime,ConstLinDecompOp-method Man page
getMeanTransitTime-methods Man page
getMeanTransitTime_method__ConstLinDecompOp Man page
getNumberOfPools,NlModel-method Man page
getNumberOfPools,TransportDecompositionOperator-method Man page
getNumberOfPools-methods Man page
getOutputFluxes,NlModel-method Man page
getOutputFluxes-methods Man page
getOutputReceivers,TransportDecompositionOperator,numeric-method Man page
getOutputReceivers-methods Man page
getParticleMonteCarloSimulator,NlModel-method Man page
getParticleMonteCarloSimulator-methods Man page
getRecipient Source code Source code
getReleaseFlux Man page
getReleaseFlux,Model-method Man page
getReleaseFlux-methods Man page
getReleaseFlux14 Man page
getReleaseFlux14,Model_14-method Man page
getReleaseFlux14-methods Man page
getReleaseFlux14_method__Model_14 Man page
getReleaseFlux_method__Model Man page
getSender Source code Source code
getSingleCol Source code
getTimeRange Man page
getTimeRange,BoundFc-method Man page
getTimeRange,BoundInFlux-method Man page
getTimeRange,BoundLinDecompOp-method Man page
getTimeRange,ConstLinDecompOp-method Man page
getTimeRange,DecompositionOperator-method Man page
getTimeRange,TimeMap-method Man page
getTimeRange,TransportDecompositionOperator-method Man page
getTimeRange-methods Man page
getTimeRange_method__BoundFc Man page
getTimeRange_method__BoundInFlux Man page
getTimeRange_method__BoundLinDecompOp Man page
getTimeRange_method__ConstLinDecompOp Man page
getTimeRange_method__DecompositionOperator Man page
getTimeRange_method__TimeMap Man page
getTimes Man page
getTimes,Model-method Man page
getTimes,NlModel-method Man page
getTimes-methods Man page
getTimes_method__Model Man page
getTransferCoefficients,NlModel-method Man page
getTransferCoefficients,TransportDecompositionOperator-method Man page
getTransferCoefficients-methods Man page
getTransferMatrix,TransportDecompositionOperator-method Man page
getTransferMatrix-methods Man page
getTransitTimeDistributionDensity Man page
getTransitTimeDistributionDensity,ConstLinDecompOp-method Man page
getTransitTimeDistributionDensity-methods Man page
getTransitTimeDistributionDensity_method__ConstLinDecompOp Man page
getValues,ConstFc-method Man page
getValues-methods Man page
initialize,BoundFc-method Man page
initialize,BoundInFlux-method Man page
initialize,BoundLinDecompOp-method Man page
initialize,ConstFc-method Man page
initialize,ConstLinDecompOp-method Man page
initialize,DecompositionOperator-method Man page
initialize,MCSim-method Man page
initialize,Model-method Man page
initialize,Model_14-method Man page
initialize,NlModel-method Man page
initialize,TimeMap-method Man page
initialize,TransportDecompositionOperator-method Man page
initialize-methods Man page
initialize_method__BoundFc Man page
initialize_method__BoundInFlux Man page
initialize_method__BoundLinDecompOp Man page
initialize_method__ConstLinDecompOp Man page
initialize_method__DecompositionOperator Man page
initialize_method__Model Man page
initialize_method__Model_14 Man page
initialize_method__TimeMap Man page
is.negative Source code Source code
key Source code
leaveKey Source code
linMaker Source code
linesCPool Man page
namedPlot Source code
pe Source code
plot,ANY-method Man page
plot,MCSim-method Man page
plot,Model-method Man page
plot,NlModel-method Man page
plot-methods Man page
plotAndCheck Source code
plotC14Pool Man page
plotCPool Man page
plot_method__Model Man page
pp Source code
print,ANY-method Man page
print,Model-method Man page
print,NlModel-method Man page
print-methods Man page
print_method__Model Man page
res2fun Source code
show,Model-method Man page
show,NlModel-method Man page
show-methods Man page
show_method__Model Man page
solver Source code
spectralNorm Source code
stockKey Source code
summary,ANY-method Man page
summary,Model-method Man page
summary,NlModel-method Man page
summary-methods Man page
summary_method__Model Man page
supported14CFractionFormats Source code
turnoverFit Man page
vecFuncMaker Source code

Files

inst
inst/CITATION
inst/tests
inst/tests/proto.MCSimulatorTest.R
inst/tests/runit.TwopSerial_MCSim.R
inst/tests/protected
inst/tests/protected/runit.SoilRPaper1.R
inst/tests/protected/runit.LowVerticalRatesPaper.R
inst/tests/Rplots.pdf
inst/tests/runit.automatic.TwopParallel_ZeroInput.pdf
inst/tests/runit.automatic.OnePool_C14_ZeroDecay_Zero_c14.pdf
inst/tests/runit.MeanAge3.R
inst/tests/example.GeneralModel_14.R
inst/tests/runit.MeanAge.pdf
inst/tests/FeM2.R
inst/tests/runit.operators.R
inst/tests/runit.Interfaces.R
inst/tests/runit.automatic.TwopParallel_ZeroDecayInputOnly.pdf
inst/tests/runit.formatConversion.R
inst/tests/runit.SoilRPaper1.R
inst/tests/example.getReleaseFlux14_method__Model_14.R
inst/tests/runit.ThreepSerial_linear_vs_nonlinear.pdf
inst/tests/tex.log
inst/tests/runit.automatic.OnePool_C14_ZeroDecay_Zero_c14_fromDelta14C.pdf
inst/tests/functions.pyc
inst/tests/runit.test.NlModel.R
inst/tests/runit.automatic.op.pdf
inst/tests/runit.ThreepSerialFeedback_linear_vs_nonlinear.pdf
inst/tests/runit.BackwardTransferTime.R
inst/tests/TestNp.R
inst/tests/runit.BackwardTransferTime.pdf
inst/tests/Manzoniexample.pyc
inst/tests/ExampleTestSuite.R
inst/tests/csall.sh
inst/tests/runit.MeanAge3.pdf.orig
inst/tests/runit.MeanAge.Densities.pdf
inst/tests/runit.DeprecationWarnings.R
inst/tests/GlobalEmissions.csv
inst/tests/runit.TimeReversedSolution.R
inst/tests/cRtest.sh
inst/tests/runit.LinearDecompositionOperator.R
inst/tests/runit.test.TimeMap.R
inst/tests/ThreepParallelAnalytical.R
inst/tests/all.R
inst/tests/example.getF14R_method__Model_14.R
inst/tests/runit.automatic.OnePool_C14_equalDecay_ZeroInput_c14.pdf
inst/tests/c14test.R
inst/tests/runit.automatic.FourpSerial_1.pdf
inst/tests/C14exampleFromDelta14C.pyc
inst/tests/package.test.manual.index
inst/tests/addHeader.sh
inst/tests/test.paramest.R
inst/tests/runit.MeanAge2.pdf
inst/tests/example.initialize_method__Model_14.R
inst/tests/sall.R
inst/tests/package.manual.help.R
inst/tests/example.getTimeRange_method__TimeMap.R
inst/tests/runit.automatic.OnePool_C14_equalDecay_ZeroInput_c14_fromDelta14C.pdf
inst/tests/runit.automatic.TwoPool_C14_equalDecay_ZeroInput_c14_fromDelta14C.pdf
inst/tests/runit.ThreepSerialFeedback_linear_vs_nonlinear.R
inst/tests/tasklist_proto.R
inst/tests/runit.MeanAge3.pdf
inst/tests/dialog-warning.wav
inst/tests/runit.automatic.OnePool_C14_ZeroDecay_constantInputrate_c14_fromDelta14C.pdf
inst/tests/runit.test.SoilRF0.R
inst/tests/runit.MeanAgeImpuls.pdf
inst/tests/runit.automatic.OnePool_C14_ZeroDecay_constantInputrate_c14.pdf
inst/tests/runit.automatic.ThreepSerial_2.pdf
inst/tests/C14example.pyc
inst/tests/runit.ThreepSerial_linear_vs_nonlinear.R
inst/tests/runit.automatic.ThreepSerial_1.pdf
inst/tests/TwopParallelAnalytical.R
inst/tests/runit.nonlinear.R
inst/tests/runit.TwopSerial_linear_vs_nonlinear.R
inst/tests/runit.test.Model_14.R
inst/tests/runit.automatic.TwoPool_C14_equalDecay_ZeroInput_c14.pdf
inst/tests/runit.check.pass.R
inst/tests/example.initialize_method__Model.R
inst/tests/runit.NonlinearAtmosphericModelLong.pdf
inst/tests/Rtest.R
inst/tests/runit.MeanAge2.R
inst/tests/exall.R
inst/tests/runit.NonlinearAtmosphericModelMeanAge.pdf
inst/tests/runit.automatic.TwopFeedback.pdf
inst/tests/prolog.R
inst/tests/runit.2TwopSerial_linear_vs_nonlinear.R
inst/tests/runit.ThreepFeedback_MCSim.R
inst/tests/runit.test.Conversion.R
inst/tests/makePlots.R
inst/tests/Rexample.pyc
inst/tests/testhelpers.R
inst/tests/runit.BoundFc.R
inst/tests/runit.test.Conversion.pdf
inst/tests/runit.NonlinearAtmosphericModel.R
inst/tests/runit.MeanAge.R
inst/tests/runit.automatic.ThreepFeedback_1.pdf
inst/tests/runit.automatic.TwopParallel_constantInput.pdf
inst/tests/runit.testNumberOfPools.R
inst/tests/fme.f90
inst/tests/runit.test.TimeReversedSolution.pdf
inst/tests/runit.manuel.Manzoni.op.R
inst/tests/runit.test.checkSizes.R
inst/tests/automatic
inst/tests/automatic/runit.ThreepSerial_2.R
inst/tests/automatic/runit.Manzoni.TwopFeedback.R
inst/tests/automatic/runit.c14_fromDelta14C.TwoPool_C14_equalDecay_ZeroInput.R
inst/tests/automatic/testmaker.py
inst/tests/automatic/runit.ThreepSerial_1.R
inst/tests/automatic/runit.OnePool_C14_ZeroDecay_Zero.R
inst/tests/automatic/runit.c14_fromDelta14C.OnePool_C14_ZeroDecay_Zero.R
inst/tests/automatic/Rexample.py
inst/tests/automatic/runit.OnePool_C14_ZeroDecay_constantInputrate.R
inst/tests/automatic/runit.c14_fromDelta14C.OnePool_C14_ZeroDecay_constantInputrate.R
inst/tests/automatic/Manzoniexample.py
inst/tests/automatic/mmtestmaker.py
inst/tests/automatic/runit.TwopParallel_constantInput.R
inst/tests/automatic/runit.TwopParallel_ZeroDecayInputOnly.R
inst/tests/automatic/runit.OnePool_C14_equalDecay_ZeroInput.R
inst/tests/automatic/functions.py
inst/tests/automatic/runit.TwopParallel_ZeroInput.R
inst/tests/automatic/RexampleWithTransfer.py
inst/tests/automatic/runit.ThreepFeedback_1.R
inst/tests/automatic/C14exampleFromDelta14C.py
inst/tests/automatic/runit.TwoPool_C14_equalDecay_ZeroInput.R
inst/tests/automatic/runit.FourpSerial_1.R
inst/tests/automatic/runit.c14_fromDelta14C.OnePool_C14_equalDecay_ZeroInput.R
inst/tests/automatic/C14example.py
inst/tests/automatic/runit.Manzoni.op.R
inst/tests/example.getC.R
inst/tests/example.getReleaseFlux_method__Model.R
inst/tests/runit.test.Model.R
inst/tests/tryCatch.R
inst/extdata
inst/extdata/inputFluxForVignetteGeneralModelShort
inst/extdata/inputFluxForVignetteGeneralModel
inst/doc
inst/doc/ParameterEstimation.pdf
inst/doc/GeneralModel.R
inst/doc/ParameterEstimation.Rnw
inst/doc/ParameterEstimation.R
inst/doc/GeneralModel.Rnw
inst/doc/GeneralModel.pdf
NAMESPACE
NEWS
data
data/IntCal09.rda
data/C14Atm.rda
data/C14Atm_NH.rda
data/Hua2013.rda
data/IntCal13.rda
data/eCO2.rda
data/HarvardForest14CO2.rda
R
R/GaudinskiModel14.R
R/1_helperFunctions.R
R/TwopSeriesModel.R
R/fW.RothC.R
R/2_TimeMap_deprecated_in_1.2.R
R/bacwaveModel.R
R/fW.Daycent2.R
R/GeneralNlModel.R
R/fT.Century1.R
R/ThreepFeedbackModel.R
R/fW.Moyano.R
R/fW.Century.R
R/supported14CFractionFormats.R
R/TwopSeriesModel14.R
R/ParallelModel.R
R/2_InFlux.R
R/TwopParallelModel.R
R/ThreepParallelModel.R
R/5_MCSim.R
R/MeanAge.R
R/fT.KB.R
R/fT.Daycent2.R
R/3_deSolve.lsoda.wrapper.R
R/GeneralModel_14Methods.R
R/fT.RothC.R
R/fT.Standcarb.R
R/fT.Demeter.R
R/turnoverFit.R
R/fT.linear.R
R/Model.R
R/ThreepSeriesModel.R
R/warnings.R
R/YassoModel.R
R/fW.Standcarb.R
R/OnepModel.R
R/OnepModel14.R
R/linesCPool.R
R/6_DecopmOp.R
R/ConstantDecompositionOperator.R
R/solver.R
R/ThreepFeedbackModel14.R
R/3_BoundInFlux.R
R/TwopFeedbackModel.R
R/ICBMModel.R
R/plotCPool.R
R/fW.Demeter.R
R/TwopParallelModel14.R
R/7_DecompositionOperator_deprecated_in_1.2.R
R/7_BoundLinDecompOp.R
R/FcAtm_deprecated_in_1.2.R
R/ThreepParallelModel14.R
R/vecFuncMaker.R
R/fT.Daycent1.R
R/Yasso07Model.R
R/fW.Gompertz.R
R/TwopFeedbackModel14.R
R/fT.Century2.R
R/fW.Candy.R
R/bind.C14curves.R
R/fW.Daycent1.R
R/4_SoilR.F0__deprecated_in_1.2.R
R/fT.Arrhenius.R
R/GeneralModelMethods.R
R/RothCModel.R
R/plotC14Pool.R
R/ConstFc.R
R/testhelpers.R
R/1_genericFunctions.R
R/fW.Skopp.R
R/NpYdot.R
R/SoilR.euler.R
R/3_RespirationCoefficients.R
R/ThreepSeriesModel14.R
R/fT.LandT.R
R/BoundFc.R
R/linMaker.R
R/MeanTT.R
R/fT.Q10.R
R/4_NlModel.R
R/ThreepairMMmodel.R
R/Model_14.R
R/TwopMMmodel.R
R/spectralNorm.R
R/3_TransportDecompositionOperator.R
vignettes
vignettes/ParameterEstimation.Rnw
vignettes/GeneralModel.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/115.Rd
man/117.Rd
man/38.Rd
man/162.Rd
man/39.Rd
man/47.Rd
man/140.Rd
man/217.Rd
man/63.Rd
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man/203.Rd
man/180.Rd
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man/147.Rd
man/119.Rd
man/174.Rd
man/20.Rd
man/107.Rd
man/88.Rd
man/4.Rd
man/81.Rd
man/manMan
man/manMan/Hua2013.Rd
man/manMan/as.character.Rd
man/manMan/eCO2.Rd
man/manMan/C14Atm_NH.Rd
man/manMan/IntCal09.Rd
man/manMan/C14Atm.Rd
man/manMan/HarvardForest14CO2.Rd
man/manMan/IntCal13.Rd
man/151.Rd
man/201.Rd
man/155.Rd
man/146.Rd
man/5.Rd
man/218.Rd
man/75.Rd
man/152.Rd
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man/161.Rd
man/10.Rd
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man/26.Rd
man/187.Rd
man/32.Rd
man/171.Rd
man/62.Rd
man/78.Rd
man/130.Rd
man/209.Rd
man/113.Rd
man/84.Rd
man/9.Rd
man/158.Rd
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man/77.Rd
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man/181.Rd
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man/135.Rd
man/1.Rd
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man/194.Rd
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man/121.Rd
man/122.Rd
man/116.Rd
man/21.Rd
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man/7.Rd
man/202.Rd
man/144.Rd
man/79.Rd
man/74.Rd
man/106.Rd
man/114.Rd
man/191.Rd
man/108.Rd
man/157.Rd
man/220.Rd
man/195.Rd
man/45.Rd
man/86.Rd
man/213.Rd
man/103.Rd
man/160.Rd
man/204.Rd
man/192.Rd
man/97.Rd
man/137.Rd
man/206.Rd
man/112.Rd
man/22.Rd
man/55.Rd
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man/207.Rd
man/153.Rd
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man/95.Rd
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man/17.Rd
man/156.Rd
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man/125.Rd
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man/210.Rd
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man/199.Rd
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man/170.Rd
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man/128.Rd
man/120.Rd
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man/185.Rd
man/2.Rd
man/72.Rd
man/189.Rd
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man/12.Rd
man/85.Rd
man/205.Rd
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man/142.Rd
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man/102.Rd
man/87.Rd
man/64.Rd
man/41.Rd
man/37.Rd
man/61.Rd
man/193.Rd
man/28.Rd
SoilR documentation built on May 19, 2017, 8:05 a.m.