API for SomaDataIO
Input/Output 'SomaScan' Data
| Global functions | |
|---|---|
| $.soma_adat | Man page |
| $<-.soma_adat | Man page |
| %>% | Man page |
| .bullets | Source code |
| .checkADAT | Source code |
| .check_anml | Source code |
| .check_direction | Source code |
| .code | Source code |
| .create_checklist | Source code |
| .diffAdatColumns | Source code |
| .dummy | Source code |
| .getControls | Source code |
| .getDilList | Source code |
| .getHeaderLines | Source code |
| .getOutliers | Source code |
| .get_lift_ref | Source code |
| .is_int | Source code |
| .metaTypes | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| .pad | Source code |
| .refactorData | Source code |
| .setAttr | Source code |
| .soma_adat_restore | Source code |
| .sort_attr | Source code |
| .strip_raw_key | Source code |
| .taskbox | Source code |
| .trimRunawayTabs | Source code |
| .value | Source code |
| .ver_type | Source code |
| .verbosity | Source code |
| ==.soma_adat | Man page |
| Col.Meta | Man page |
| Math.soma.adat | Source code |
| Math.soma_adat | Man page Source code |
| Ops.soma_adat | Man page Source code |
| SeqId | Man page |
| SomaDataIO | Man page |
| SomaDataIO-deprecated | Man page |
| SomaDataIO-package | Man page |
| SomaScanObjects | Man page |
| Summary.soma_adat | Man page Source code |
| [.soma_adat | Man page |
| [<-.soma_adat | Man page |
| [[.soma_adat | Man page |
| [[<-.soma_adat | Man page |
| `$.soma_adat` | Source code |
| `%!=%` | Source code |
| `%==%` | Source code |
| `%@@%` | Source code |
| `%||%` | Source code |
| `==.soma_adat` | Source code |
| `[.soma_adat` | Source code |
| `[<-.soma_adat` | Source code |
| `[[.soma_adat` | Source code |
| `row.names<-.soma_adat` | Source code |
| adat-helpers | Man page |
| adat2eSet | Man page Source code |
| addAttributes | Man page Source code |
| addClass | Man page Source code |
| add_rowid | Man page Source code |
| annotations | Man page |
| anti_join | Man page |
| anti_join.soma_adat | Source code |
| antilog | Man page |
| apt2seqid | Man page Source code |
| arrange | Man page |
| arrange.soma_adat | Source code |
| calcOutlierMap | Man page Source code |
| calc_eLOD | Man page Source code |
| catchColMeta | Source code |
| catchDims | Source code |
| catchFile | Source code |
| catchHeaderMeta | Source code |
| checkHeader | Source code |
| checkSomaScanVersion | Man page Source code |
| cleanNames | Man page Source code |
| col2rn | Man page Source code |
| collapseAdats | Man page Source code |
| colmeta | Man page |
| combine_colmeta | Source code |
| combine_header | Source code |
| convertColMeta | Source code |
| count | Man page |
| count.soma_adat | Source code |
| create_legal | Source code |
| create_release_issue | Source code |
| diffAdats | Man page Source code |
| ex_analytes | Man page |
| ex_anno_tbl | Man page |
| ex_clin_data | Man page |
| ex_target_names | Man page |
| example_data | Man page |
| file_ext | Source code |
| filter | Man page |
| filter.soma_adat | Source code |
| full_join | Man page |
| genRowNames | Source code |
| getAdatVersion | Man page Source code |
| getAdatVersion.default | Source code |
| getAdatVersion.list | Source code |
| getAdatVersion.soma_adat | Source code |
| getAnalyteInfo | Man page Source code |
| getAnalytes | Man page Source code |
| getAnalytes.character | Source code |
| getAnalytes.data.frame | Source code |
| getAnalytes.default | Source code |
| getAnalytes.matrix | Source code |
| getAnalytes.recipe | Source code |
| getAnnoVer | Source code |
| getFeatureData | Man page Source code |
| getFeatures | Man page Source code |
| getMeta | Man page Source code |
| getMeta.character | Source code |
| getMeta.data.frame | Source code |
| getMeta.default | Source code |
| getMeta.matrix | Source code |
| getOutlierIds | Man page Source code |
| getSeqId | Man page Source code |
| getSeqIdMatches | Man page Source code |
| getSignalSpace | Man page Source code |
| getSomaScanLiftCCC | Man page Source code |
| getSomaScanVersion | Man page Source code |
| getSomamerData | Man page Source code |
| getSomamers | Man page Source code |
| getTargetNames | Man page Source code |
| groupGenerics | Man page |
| group_by | Man page |
| group_by.soma_adat | Source code |
| has_implicit_rn | Source code |
| has_length | Source code |
| has_rn | Man page Source code |
| inner_join | Man page |
| is.SeqId | Man page Source code |
| is.apt | Man page Source code |
| is.intact.attributes | Man page Source code |
| is.soma_adat | Man page Source code |
| is_intact_attr | Man page Source code |
| is_lifted | Man page Source code |
| is_seqFormat | Man page Source code |
| is_seqFormat.character | Source code |
| is_seqFormat.default | Source code |
| is_seqFormat.soma_adat | Source code |
| left_join | Man page |
| left_join.soma_adat | Source code |
| lift_adat | Man page Source code |
| loadAdatsAsList | Man page Source code |
| locateSeqId | Man page Source code |
| matchSeqIds | Man page Source code |
| median.soma_adat | Man page Source code |
| meltExpressionSet | Man page Source code |
| merge.soma_adat | Source code |
| merge_clin | Man page Source code |
| mutate | Man page |
| mutate.soma_adat | Source code |
| params | Man page |
| parseCheck | Source code |
| parseHeader | Man page Source code |
| paste_xy | Source code |
| pivotExpressionSet | Man page Source code |
| plot.Map | Man page Source code |
| plot.outlier_map | Source code |
| preProcessAdat | Man page Source code |
| prepHeaderMeta | Source code |
| print.adat_summary | Source code |
| print.outlier_map | Man page Source code |
| print.soma_adat | Man page Source code |
| print.target_map | Source code |
| read.adat | Man page Source code |
| read_adat | Man page Source code |
| read_annotations | Man page Source code |
| reexports | Man page |
| regexSeqId | Man page Source code |
| rename | Man page |
| rename.soma_adat | Source code |
| right_join | Man page |
| rm_rn | Man page Source code |
| rn2col | Man page Source code |
| rowmeta | Man page |
| rownames | Man page |
| sample_frac | Man page |
| sample_frac.soma_adat | Source code |
| sample_n | Man page |
| sample_n.soma_adat | Source code |
| scaleAnalytes | Source code |
| select.soma_adat | Source code |
| semi_join | Man page |
| separate | Man page |
| separate.soma_adat | Source code |
| seqid2apt | Man page Source code |
| set_rn | Man page Source code |
| slice | Man page |
| slice.soma_adat | Source code |
| slice_sample | Man page |
| slice_sample.soma_adat | Source code |
| slug_version | Source code |
| soma_adat | Man page |
| squish | Source code |
| summary.soma_adat | Man page Source code |
| syncColMeta | Source code |
| transform | Man page |
| transform.soma_adat | Man page Source code |
| ungroup | Man page |
| ungroup.soma_adat | Source code |
| unite | Man page |
| unite.soma_adat | Source code |
| write_adat | Man page Source code |
