API for SomaDataIO
Input/Output 'SomaScan' Data

Global functions
$.soma_adat Man page
$<-.soma_adat Man page
%>% Man page
.bullets Source code
.checkADAT Source code
.check_anml Source code
.check_direction Source code
.code Source code
.create_checklist Source code
.diffAdatColumns Source code
.dummy Source code
.getControls Source code
.getHeaderLines Source code
.get_lift_ref Source code
.metaTypes Source code
.onAttach Source code
.onLoad Source code
.pad Source code
.setAttr Source code
.soma_adat_restore Source code
.sort_attr Source code
.strip_raw_key Source code
.taskbox Source code
.trimRunawayTabs Source code
.value Source code
.ver_type Source code
.verbosity Source code
==.soma_adat Man page
Col.Meta Man page
Math.soma.adat Source code
Math.soma_adat Man page Source code
Ops.soma_adat Man page Source code
SeqId Man page
SomaDataIO Man page
SomaDataIO-deprecated Man page
SomaDataIO-package Man page
SomaScanObjects Man page
Summary.soma_adat Man page Source code
[.soma_adat Man page
[<-.soma_adat Man page
[[.soma_adat Man page
[[<-.soma_adat Man page
`$.soma_adat` Source code
`%!=%` Source code
`%==%` Source code
`%@@%` Source code
`%||%` Source code
`==.soma_adat` Source code
`[.soma_adat` Source code
`[<-.soma_adat` Source code
`[[.soma_adat` Source code
`row.names<-.soma_adat` Source code
adat-helpers Man page
adat2eSet Man page Source code
addAttributes Man page Source code
addClass Man page Source code
add_rowid Man page Source code
annotations Man page
anti_join Man page
anti_join.soma_adat Source code
antilog Man page
apt2seqid Man page Source code
arrange Man page
arrange.soma_adat Source code
calc_eLOD Man page Source code
catchColMeta Source code
catchDims Source code
catchFile Source code
catchHeaderMeta Source code
checkHeader Source code
checkSomaScanVersion Man page Source code
cleanNames Man page Source code
col2rn Man page Source code
collapseAdats Man page Source code
colmeta Man page
combine_colmeta Source code
combine_header Source code
convertColMeta Source code
count Man page
count.soma_adat Source code
create_legal Source code
create_release_issue Source code
diffAdats Man page Source code
ex_analytes Man page
ex_anno_tbl Man page
ex_target_names Man page
example_data Man page
filter Man page
filter.soma_adat Source code
full_join Man page
genRowNames Source code
getAdatVersion Man page Source code
getAdatVersion.default Source code
getAdatVersion.list Source code
getAdatVersion.soma_adat Source code
getAnalyteInfo Man page Source code
getAnalytes Man page Source code
getAnalytes.character Source code
getAnalytes.data.frame Source code
getAnalytes.default Source code
getAnalytes.matrix Source code
getAnalytes.recipe Source code
getAnnoVer Source code
getFeatureData Man page Source code
getFeatures Man page Source code
getMeta Man page Source code
getMeta.character Source code
getMeta.data.frame Source code
getMeta.default Source code
getMeta.matrix Source code
getSeqId Man page Source code
getSeqIdMatches Man page Source code
getSignalSpace Man page Source code
getSomaScanLiftCCC Man page Source code
getSomaScanVersion Man page Source code
getSomamerData Man page Source code
getSomamers Man page Source code
getTargetNames Man page Source code
groupGenerics Man page
group_by Man page
group_by.soma_adat Source code
has_implicit_rn Source code
has_rn Man page Source code
inner_join Man page
is.SeqId Man page Source code
is.apt Man page Source code
is.intact.attributes Man page Source code
is.soma_adat Man page Source code
is_intact_attr Man page Source code
is_lifted Man page Source code
is_seqFormat Man page Source code
is_seqFormat.character Source code
is_seqFormat.default Source code
is_seqFormat.soma_adat Source code
left_join Man page
left_join.soma_adat Source code
lift_adat Man page Source code
loadAdatsAsList Man page Source code
locateSeqId Man page Source code
matchSeqIds Man page Source code
median.soma_adat Man page Source code
meltExpressionSet Man page Source code
merge.soma_adat Source code
merge_clin Man page Source code
mutate Man page
mutate.soma_adat Source code
params Man page
parseCheck Source code
parseHeader Man page Source code
paste_xy Source code
pivotExpressionSet Man page Source code
prepHeaderMeta Source code
print.adat_summary Source code
print.soma_adat Man page Source code
print.target_map Source code
read.adat Man page Source code
read_adat Man page Source code
read_annotations Man page Source code
reexports Man page
regexSeqId Man page Source code
rename Man page
rename.soma_adat Source code
right_join Man page
rm_rn Man page Source code
rn2col Man page Source code
rowmeta Man page
rownames Man page
sample_frac Man page
sample_frac.soma_adat Source code
sample_n Man page
sample_n.soma_adat Source code
scaleAnalytes Source code
select.soma_adat Source code
semi_join Man page
separate Man page
separate.soma_adat Source code
seqid2apt Man page Source code
set_rn Man page Source code
slice Man page
slice.soma_adat Source code
slice_sample Man page
slice_sample.soma_adat Source code
slug_version Source code
soma_adat Man page
squish Source code
summary.soma_adat Man page Source code
syncColMeta Source code
transform Man page
transform.soma_adat Man page Source code
ungroup Man page
ungroup.soma_adat Source code
unite Man page
unite.soma_adat Source code
write_adat Man page Source code
SomaDataIO documentation built on April 4, 2025, 2:14 a.m.