Man pages for SomaDataIO
Input/Output 'SomaScan' Data

adat2eSetConvert ADAT to ExpressionSet Object
adat-helpersHelpers to Extract Information from an ADAT
addAttributesAdd Attributes to 'soma_adat' Objects
addClassAdd a Class to an Object
calc_eLODCalculate Estimated Limit of Detection (eLOD)
cleanNamesClean Up Character String
Col.MetaAnalyte Annotations, Col.Meta, and Row Info
diffAdatsDiff Two ADAT Objects
getAnalyteInfoGet Analyte Annotation Information
getAnalytesGet Analytes
groupGenericsGroup Generics for 'soma_adat' Class Objects
is_intact_attrAre Attributes Intact?
is_seqFormatTest 'AptName' Format
lift_adatLift an ADAT Between Assay Versions
loadAdatsAsListLoad ADAT files as a list
merge_clinMerge Clinical Data into SomaScan
paramsCommon Parameters in 'SomaDataIO'
parseHeaderSomaLogic ADAT parser
pipePipe operator
pivotExpressionSetConvert to Long Format
read_adatRead (Load) SomaLogic ADATs
read_annotationsImport a SomaLogic Annotations File
reexportsObjects exported from other packages
rownamesHelpers for Working With Row Names
SeqIdWorking with SomaLogic SeqIds
soma_adatThe 'soma_adat' Class and S3 Methods
SomaDataIO-deprecatedDeprecated function(s) of the 'SomaDataIO' package
SomaDataIO-packageSomaDataIO: Input/Output 'SomaScan' Data
SomaScanObjectsExample Data and Objects
transformScale Transform 'soma_adat' Columns/Rows
write_adatWrite an ADAT to File
SomaDataIO documentation built on April 4, 2025, 2:14 a.m.