adat2eSet | Convert ADAT to ExpressionSet Object |
adat-helpers | Helpers to Extract Information from an ADAT |
addAttributes | Add Attributes to 'soma_adat' Objects |
addClass | Add a Class to an Object |
calc_eLOD | Calculate Estimated Limit of Detection (eLOD) |
cleanNames | Clean Up Character String |
Col.Meta | Analyte Annotations, Col.Meta, and Row Info |
diffAdats | Diff Two ADAT Objects |
getAnalyteInfo | Get Analyte Annotation Information |
getAnalytes | Get Analytes |
groupGenerics | Group Generics for 'soma_adat' Class Objects |
is_intact_attr | Are Attributes Intact? |
is_seqFormat | Test 'AptName' Format |
lift_adat | Lift an ADAT Between Assay Versions |
loadAdatsAsList | Load ADAT files as a list |
merge_clin | Merge Clinical Data into SomaScan |
params | Common Parameters in 'SomaDataIO' |
parseHeader | SomaLogic ADAT parser |
pipe | Pipe operator |
pivotExpressionSet | Convert to Long Format |
read_adat | Read (Load) SomaLogic ADATs |
read_annotations | Import a SomaLogic Annotations File |
reexports | Objects exported from other packages |
rownames | Helpers for Working With Row Names |
SeqId | Working with SomaLogic SeqIds |
soma_adat | The 'soma_adat' Class and S3 Methods |
SomaDataIO-deprecated | Deprecated function(s) of the 'SomaDataIO' package |
SomaDataIO-package | SomaDataIO: Input/Output 'SomaScan' Data |
SomaScanObjects | Example Data and Objects |
transform | Scale Transform 'soma_adat' Columns/Rows |
write_adat | Write an ADAT to File |
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