Man pages for SomaDataIO
Input/Output 'SomaScan' Data
| adat2eSet | Convert ADAT to ExpressionSet Object |
| adat-helpers | Helpers to Extract Information from an ADAT |
| addAttributes | Add Attributes to 'soma_adat' Objects |
| addClass | Add a Class to an Object |
| calc_eLOD | Calculate Estimated Limit of Detection (eLOD) |
| calcOutlierMap | Calculate MAD Outlier Map |
| cleanNames | Clean Up Character String |
| Col.Meta | Analyte Annotations, Col.Meta, and Row Info |
| diffAdats | Diff Two ADAT Objects |
| getAnalyteInfo | Get Analyte Annotation Information |
| getAnalytes | Get Analytes |
| getOutlierIds | Get Flagged Ids From MAD Outlier Map |
| groupGenerics | Group Generics for 'soma_adat' Class Objects |
| is_intact_attr | Are Attributes Intact? |
| is_seqFormat | Test 'AptName' Format |
| lift_adat | Lift an ADAT Between Assay Versions |
| loadAdatsAsList | Load ADAT files as a list |
| merge_clin | Merge Clinical Data into SomaScan |
| params | Common Parameters in 'SomaDataIO' |
| parseHeader | SomaLogic ADAT parser |
| pipe | Pipe operator |
| pivotExpressionSet | Convert to Long Format |
| plot.Map | Plot Image Maps |
| preProcessAdat | Pre-Process an ADAT Object for Analysis |
| read_adat | Read (Load) SomaLogic ADATs |
| read_annotations | Import a SomaLogic Annotations File |
| reexports | Objects exported from other packages |
| rownames | Helpers for Working With Row Names |
| SeqId | Working with SomaLogic SeqIds |
| soma_adat | The 'soma_adat' Class and S3 Methods |
| SomaDataIO-deprecated | Deprecated function(s) of the 'SomaDataIO' package |
| SomaDataIO-package | SomaDataIO: Input/Output 'SomaScan' Data |
| SomaScanObjects | Example Data and Objects |
| transform | Scale Transform 'soma_adat' Columns/Rows |
| write_adat | Write an ADAT to File |
