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SoupX: Single Cell mRNA Soup eXterminator
Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.
Getting started
Browse package contents
Package details |
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| Author | Matthew Daniel Young |
| Maintainer | Matthew Daniel Young <my4@sanger.ac.uk> |
| License | GPL-2 |
| Version | 1.6.2 |
| URL | https://github.com/constantAmateur/SoupX |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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