SoupX: Single Cell mRNA Soup eXterminator

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.

Package details

AuthorMatthew Daniel Young
MaintainerMatthew Daniel Young <my4@sanger.ac.uk>
LicenseGPL-2
Version1.5.2
URL https://github.com/constantAmateur/SoupX
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("SoupX")

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SoupX documentation built on May 17, 2021, 9:08 a.m.