SpATS-package: Spatial analysis of field trials with splines
In SpATS: Spatial Analysis of Field Trials with Splines
SpATS-package R Documentation
Spatial analysis of field trials with splines
Description
This package allows the use of two-dimensional (2D) penalised splines (P-splines) in the context of agricultural field trials. Traditionally, the modelling of the spatial or environmental effect in the expression of phenotypes has been done assuming correlated random noise (Gilmour et al, 1997). We, however, propose to model the spatial variation explicitly using 2D P-splines (Rodriguez-Alvarez et al., 2018). Besides the existence of fast and stable algorithms for estimation (Rodriguez-Alvarez et al., 2015; Lee et al., 2013), the direct and nice interpretation of the spatial trend that this approach provides makes it attractive for the analysis of field experiments.
Details
Package: SpATS
Type: Package
Version: 1.0-19
Date: 2024-10-10
License: GPL
Author(s)
Maria Xose Rodriguez-Alvarez, Martin Boer, Paul Eilers, Fred van Eeuwijk
Maintainer: Maria Xose Rodriguez-Alvarez <mxrodriguez@uvigo.es>
References
Gilmour, A.R., Cullis, B.R., and Verbyla, A.P. (1997). Accounting for Natural and Extraneous Variation in the Analysis of Field Experiments. Journal of Agricultural, Biological, and Environmental Statistics, 2, 269 - 293.
Lee, D.-J., Durban, M., and Eilers, P.H.C. (2013). Efficient two-dimensional smoothing with P-spline ANOVA mixed models and nested bases. Computational Statistics and Data Analysis, 61, 22 - 37.
Rodriguez-Alvarez, M.X., Lee, D.-J., Kneib, T., Durban, M., and Eilers, P.H.C. (2015). Fast smoothing parameter separation in multidimensional generalized P-splines: the SAP algorithm. Statistics and Computing, 25, 941 - 957.
Rodriguez-Alvarez, M.X, Boer, M.P., van Eeuwijk, F.A., and Eilers, P.H.C. (2018). Correcting for spatial heterogeneity in plant breeding experiments with P-splines. Spatial Statistics, 23, 52 - 71. https://doi.org/10.1016/j.spasta.2017.10.003.
SpATS documentation built on Oct. 16, 2024, 9:06 a.m.
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| SpATS-package | R Documentation |
Spatial analysis of field trials with splines
Description
This package allows the use of two-dimensional (2D) penalised splines (P-splines) in the context of agricultural field trials. Traditionally, the modelling of the spatial or environmental effect in the expression of phenotypes has been done assuming correlated random noise (Gilmour et al, 1997). We, however, propose to model the spatial variation explicitly using 2D P-splines (Rodriguez-Alvarez et al., 2018). Besides the existence of fast and stable algorithms for estimation (Rodriguez-Alvarez et al., 2015; Lee et al., 2013), the direct and nice interpretation of the spatial trend that this approach provides makes it attractive for the analysis of field experiments.
Details
| Package: | SpATS |
| Type: | Package |
| Version: | 1.0-19 |
| Date: | 2024-10-10 |
| License: | GPL |
Author(s)
Maria Xose Rodriguez-Alvarez, Martin Boer, Paul Eilers, Fred van Eeuwijk
Maintainer: Maria Xose Rodriguez-Alvarez <mxrodriguez@uvigo.es>
References
Gilmour, A.R., Cullis, B.R., and Verbyla, A.P. (1997). Accounting for Natural and Extraneous Variation in the Analysis of Field Experiments. Journal of Agricultural, Biological, and Environmental Statistics, 2, 269 - 293.
Lee, D.-J., Durban, M., and Eilers, P.H.C. (2013). Efficient two-dimensional smoothing with P-spline ANOVA mixed models and nested bases. Computational Statistics and Data Analysis, 61, 22 - 37.
Rodriguez-Alvarez, M.X., Lee, D.-J., Kneib, T., Durban, M., and Eilers, P.H.C. (2015). Fast smoothing parameter separation in multidimensional generalized P-splines: the SAP algorithm. Statistics and Computing, 25, 941 - 957.
Rodriguez-Alvarez, M.X, Boer, M.P., van Eeuwijk, F.A., and Eilers, P.H.C. (2018). Correcting for spatial heterogeneity in plant breeding experiments with P-splines. Spatial Statistics, 23, 52 - 71. https://doi.org/10.1016/j.spasta.2017.10.003.
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