potato: Example genotype input format

In StAMPP: Statistical Analysis of Mixed Ploidy Populations

Description

A data frame containing Solcap potato genotype data in tetraploid and diploid format as an small example of the input format required by StAMPP

Usage

data(potato)

Format

A data frame with 30 rows and 48 variables:

Sample

Sample names

Pop

Population name

Ploidy

Ploidy level

Format

Format of genotype data

solcap_snp_c1_1

genotype data

solcap_snp_c1_1000

genotype data

solcap_snp_c1_10000

genotype data

solcap_snp_c1_10001

genotype data

solcap_snp_c1_10011

genotype data

solcap_snp_c1_10012

genotype data

solcap_snp_c1_10031

genotype data

solcap_snp_c1_10042

genotype data

solcap_snp_c1_10050

genotype data

solcap_snp_c1_10054

genotype data

solcap_snp_c1_10109

genotype data

solcap_snp_c1_10130

genotype data

solcap_snp_c1_10157

genotype data

solcap_snp_c1_10202

genotype data

solcap_snp_c1_10252

genotype data

solcap_snp_c1_10253

genotype data

solcap_snp_c1_10255

genotype data

solcap_snp_c1_1029

genotype data

solcap_snp_c1_10295

genotype data

solcap_snp_c1_10297

genotype data

solcap_snp_c1_10351

genotype data

solcap_snp_c1_10384

genotype data

solcap_snp_c1_10397

genotype data

solcap_snp_c1_10457

genotype data

solcap_snp_c1_10491

genotype data

solcap_snp_c1_10492

genotype data

solcap_snp_c1_10494

genotype data

solcap_snp_c1_10579

genotype data

solcap_snp_c1_10646

genotype data

solcap_snp_c1_10669

genotype data

solcap_snp_c1_10715

genotype data

solcap_snp_c1_10737

genotype data

solcap_snp_c1_10743

genotype data

solcap_snp_c1_10762

genotype data

solcap_snp_c1_10855

genotype data

solcap_snp_c1_10873

genotype data

solcap_snp_c1_10879

genotype data

solcap_snp_c1_10900

genotype data

solcap_snp_c1_10932

genotype data

solcap_snp_c1_1094

genotype data

solcap_snp_c1_11137

genotype data

solcap_snp_c1_11144

genotype data

solcap_snp_c1_11196

genotype data

solcap_snp_c1_11206

genotype data

Source

The example genotype data is a subset of data from the publically avaliable Solcap potato dataset which was re-scored in GenomeStudio in diploid and tetraploid formats

StAMPP documentation built on Aug. 8, 2021, 9:07 a.m.