SubVis: Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices
Version 2.0.2

Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations. 'SubVis' requires the availability of a web browser.

AuthorScott Barlowe <sabarlowe@email.wcu.edu>
Date of publication2017-05-23 03:44:06 UTC
MaintainerScott Barlowe <sabarlowe@email.wcu.edu>
LicenseGPL-3
Version2.0.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("SubVis")

Getting started

SubVis"

Popular man pages

startSubVis: Starts the SubVis app
See all...

All man pages Function index File listing

Man pages

startSubVis: Starts the SubVis app

Functions

startSubVis Man page Source code

Files

inst
inst/extdata
inst/extdata/Example_FASTA_files
inst/extdata/Example_FASTA_files/fNucl.fasta
inst/extdata/Example_FASTA_files/pFalc.fasta
inst/extdata/Example_FASTA_files/gpr12.fasta
inst/extdata/Example_FASTA_files/gpr6.fasta
inst/extdata/Example_FASTA_files/Human.fasta
inst/extdata/Example_FASTA_files/Xenla.fasta
inst/extdata/Example_custom_matrix
inst/extdata/Example_custom_matrix/disorder_mat.txt
inst/extdata/Example_custom_matrix/scaled_adj_BLSM.txt
inst/extdata/Example_custom_matrix/masterFile_scaled_adj_bls.txt
inst/extdata/Example_custom_matrix/masterFile_gpcrtm.txt
inst/extdata/Example_custom_matrix/BLS.txt
inst/extdata/Example_custom_matrix/masterFile_disorder.txt
inst/extdata/Example_custom_matrix/scaled_BLSM.txt
inst/extdata/Example_custom_matrix/gpcrtm.txt
inst/doc
inst/doc/SubVis.Rmd
inst/doc/SubVis.html
inst/SubVisApp
inst/SubVisApp/ui.R
inst/SubVisApp/server.R
inst/SubVisApp/js
inst/SubVisApp/js/SubVisDraw.js
inst/SubVisApp/js/SubVisEvents.js
inst/SubVisApp/js/SubVisGetDecide.js
inst/SubVisApp/js/SubVisGlobals.js
inst/SubVisApp/global.R
NAMESPACE
R
R/startSubVis.R
vignettes
vignettes/SubVis.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/startSubVis.Rd
SubVis documentation built on May 23, 2017, 9:08 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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