SubVis: Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices

Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations. 'SubVis' requires the availability of a web browser.

AuthorScott Barlowe <sabarlowe@email.wcu.edu>
Date of publication2017-01-12 16:14:57
MaintainerScott Barlowe <sabarlowe@email.wcu.edu>
LicenseGPL-3
Version2.0.1

View on CRAN

Functions

startSubVis Man page

Files

SubVis
SubVis/inst
SubVis/inst/extdata
SubVis/inst/extdata/Example_FASTA_files
SubVis/inst/extdata/Example_FASTA_files/fNucl.fasta
SubVis/inst/extdata/Example_FASTA_files/pFalc.fasta
SubVis/inst/extdata/Example_FASTA_files/gpr12.fasta
SubVis/inst/extdata/Example_FASTA_files/gpr6.fasta
SubVis/inst/extdata/Example_FASTA_files/Human.fasta
SubVis/inst/extdata/Example_FASTA_files/Xenla.fasta
SubVis/inst/extdata/Example_custom_matrix
SubVis/inst/extdata/Example_custom_matrix/disorder_mat.txt
SubVis/inst/extdata/Example_custom_matrix/scaled_adj_BLSM.txt
SubVis/inst/extdata/Example_custom_matrix/masterFile_scaled_adj_bls.txt
SubVis/inst/extdata/Example_custom_matrix/masterFile_gpcrtm.txt
SubVis/inst/extdata/Example_custom_matrix/BLS.txt
SubVis/inst/extdata/Example_custom_matrix/masterFile_disorder.txt
SubVis/inst/extdata/Example_custom_matrix/scaled_BLSM.txt
SubVis/inst/extdata/Example_custom_matrix/gpcrtm.txt
SubVis/inst/doc
SubVis/inst/doc/SubVis.Rmd
SubVis/inst/doc/SubVis.html
SubVis/inst/SubVisApp
SubVis/inst/SubVisApp/ui.R
SubVis/inst/SubVisApp/server.R
SubVis/inst/SubVisApp/js
SubVis/inst/SubVisApp/js/SubVisDraw.js
SubVis/inst/SubVisApp/js/SubVisEvents.js
SubVis/inst/SubVisApp/js/SubVisGetDecide.js
SubVis/inst/SubVisApp/js/SubVisGlobals.js
SubVis/inst/SubVisApp/global.R
SubVis/NAMESPACE
SubVis/R
SubVis/R/startSubVis.R
SubVis/vignettes
SubVis/vignettes/SubVis.Rmd
SubVis/MD5
SubVis/build
SubVis/build/vignette.rds
SubVis/DESCRIPTION
SubVis/man
SubVis/man/startSubVis.Rd

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