seqlr.score.prog: seqlr.score.prog

In SubgrpID: Patient Subgroup Identification for Clinical Drug Development

seqlr.score.prog

Description

Compute score of cutoff for prognostic case

Usage

seqlr.score.prog(
  data,
  yvar,
  censorvar,
  xvar,
  cutoff,
  type,
  class.wt,
  dir,
  nsubj,
  min.sigp.prcnt
)

Arguments

data	input data frame.
yvar	response variable name.
censorvar	censoring variable name.
xvar	name of predictor for which cutpoint needs to be obtained.
cutoff	a specific cutpoint for which the score needs to be computed.
type	"c" continuous; "s" survival; "b" binary.
class.wt	vector of length 2 used to weight the accuracy score , useful when there is class imbalance in binary data defaults to c(1,1).
dir	direction of cut.
nsubj	number of subjects.
min.sigp.prcnt	desired proportion of signature positive group size for a given cutoff.

Details

Compute score of cutoff for prognostic case

Value

score (p-value of main effect) for the given cutoff.

SubgrpID documentation built on May 29, 2024, 1:33 a.m.