GetK2riData: Get the environment data

In SubpathwayGMir: Identify Metabolic Subpathways Mediated by MicroRNAs

Description

Get variables in current environment.

Usage

GetK2riData(K2riData)

Arguments

K2riData

A character string. It must be one of them, including "expMir2Tar", "miRNA2Org", "BGMiRNA", "BGGene", "gene2symbol", "gene2path", "MetabolicGEGEUEMGraph" and "MetabolicGEGEEMGraph".

Details

The parameter K2riData is "expMir2Tar", which represents to obtain all miRNA-target interactions verified by experiments.

The parameter K2riData is "miRNA2Org", which represents to obtain miRNA-organism data.

The parameter K2riData is "BGMiRNA", which represents to obtain miRNA background data.

The parameter K2riData is "BGGene", which represents to obtain gene backgound data.

The parameter K2riData is "gene2symbol", which represents to obtain gene-symbol data.

The parameter K2riData is "gene2path", which represents to obtain gene-pathway data.

The parameter K2riData is "MetabolicGEGEUEMGraph", which represents to obtain undirect KEGG metabolic pathway graphs with genes as nodes.

The parameter K2riData is "MetabolicGEGEEMGraph", which represents to obtain direct KEGG metabolic pathway graphs with genes as nodes.

Author(s)

Li Feng, Chunquan Li and Xia Li

See Also

updateOrgEnvir

Examples

## Not run: 

# obtain all miRNA-target interactions #
expMir2Tar <- GetK2riData(K2riData="expMir2Tar")
expMir2Tar[1:6,]

# obtain miRNA background #
BGMiRNA <- GetK2riData(K2riData="BGMiRNA")
BGMiRNA[1:10]


## End(Not run)

SubpathwayGMir documentation built on May 2, 2019, 2:39 a.m.