funcIndex: Inputs for the functional annotations of SNPs.

In SummaryLasso: Building Polygenic Risk Score Using GWAS Summary Statistics

Description

A 3614 x 3 matrix with (0,1) entry with 3614 SNPs and 3 functional annotations. For the element at i-th row, j-th column, the entry 0 means SNP i without j-th functional annotation; entry 1 means otherwise. follows:

• f1: The binary index for functional annotation 1.

• f2: The binary index for functional annotation 2.

• f3: The binary index for functional annotation 3.

Usage

data(summaryZ)

Format

A matrix with 3614 rows for the 3614 SNPs and 3 columns for functional annotations.

SummaryLasso documentation built on Nov. 15, 2019, 5:10 p.m.