| catage.long | Catch at Age in Long Format |
| catage.taf | Catch at Age in TAF Format |
| catage.wide | Catch at Age in Wide Format |
| catage.xtab | Catch at Age in Crosstab Format |
| check.software | Check SOFTWARE.bib Against Global Packages |
| clean | Clean TAF Directories |
| clean.boot | Clean Boot Directory |
| clean.data | Clean Data |
| clean.library | Clean TAF Library |
| clean.software | Clean TAF Software |
| convert.spaces | Convert Spaces |
| cp | Copy Files |
| ddim | Data Dimensions |
| deps | Dependencies of a Workflow |
| detach.packages | Detach Packages |
| dir.tree | Directory Tree |
| div | Divide Columns |
| dos2unix | Convert Line Endings |
| download | Download File |
| download.github | Download GitHub Repository |
| draft.data | Draft DATA.bib |
| draft.readme | Draft Readme |
| draft.software | Draft SOFTWARE.bib |
| file.encoding | File Encoding |
| flr2taf | Convert FLR Table to TAF Format |
| get.remote.sha | Get Remote SHA |
| git.repo | Git Repo |
| install.deps | Install Dependencies |
| is.r.package | Is R Package |
| latin1.to.utf8 | Convert File Encoding |
| lim | Axis Limits |
| line.endings | Line Endings |
| linreg | Linear Regression |
| long2taf | Convert Long Table to TAF Format |
| long2xtab | Convert Long Table to Crosstab Format |
| make | Run R Script if Needed |
| make.all | Run All TAF Scripts as Needed |
| make.taf | Run TAF Script if Needed |
| mkdir | Create Directory |
| msg | Show Message |
| os | Operating System |
| pdeps | Dependencies of a Package |
| period | Period |
| plus | Rename Plus Group Column |
| read.bib | Read Metadata Entries |
| read.taf | Read TAF Table |
| rmdir | Remove Empty Directory |
| rnd | Round Columns |
| sam2taf | Convert SAM Table to TAF Format |
| source.all | Run All TAF Scripts |
| source.dir | Source Directory |
| source.taf | Run TAF Script |
| summary.taf | Summary Results in TAF Format |
| taf2html | Convert TAF Table to HTML |
| taf2long | Convert TAF Table to Long Format |
| taf2xtab | Convert TAF Table to Crosstab Format |
| taf.boot | Boot TAF Analysis |
| taf.boot.path | Construct Boot Path |
| taf.colors | TAF Colors |
| taf.data.path | Construct Boot Data Path |
| taf.example | TAF Example |
| taf.install | TAF Install |
| TAF-internal | Various TAF Helper Functions |
| taf.libPaths | Add TAF Library Path |
| taf.libraries | TAF Libraries |
| taf.library | TAF Library |
| TAF-package | Transparent Assessment Framework for Reproducible Research |
| taf.png | PNG Device |
| taf.session | TAF Session |
| taf.skeleton | TAF Skeleton |
| taf.sources | List Sources |
| taf.unzip | Unzip File |
| tt | TAF Transpose |
| wide2long | Convert Wide Table to Long Format |
| write.taf | Write TAF Table |
| xtab2long | Convert Crosstab Table to Long Format |
| xtab2taf | Convert Crosstab Table to TAF Format |
| zoom | Zoom |
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