T10: Breast tumor single cells data

In TBEST: Tree Branches Evaluated Statistically for Tightness

Breast tumor single cells data

Description

This data set summarizes DNA copy number variation in 100 individual cancer cells harvested from a breast tumor. The cells belong to four subtypes, differing by ploidy.There are 47 Diploid+Pseudo-diploid, 24 Hypo-diploid, 4 Aneuploid B and 25 Aneuploid A cells. Their copy number profiles are summarized in terms of 354 amplification and deletion "cores", are computed by the CORE package.

Usage

data(T10)

Format

A data frame with 101 rows and 354 columns. Each column corresponds to a core. The first row is integer and contains the chromosome number for each core. The remaining rows are numeric, with values between 0 and 1, and each represents a DNA copy number profile of a cell.

Details

Please remove the first row before computing the distance matrix.

Source

Alexander Krasnitz, Guoli Sun, Peter Andrews, and Michael Wigler(2013) Target inference from collections of genomic intervals

References

Alexander Krasnitz, Guoli Sun, Peter Andrews, and Michael Wigler(2013) Target inference from collections of genomic intervals

Examples

data(T10)
dim(T10)

TBEST documentation built on May 25, 2022, 9:11 a.m.