data-tree_HPV58: Tree to display with dot and line plots of pairwise...
In TDbook: Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees" by Guangchuang Yu (2022, ISBN:9781032233574)
data-tree_HPV58 R Documentation
Tree to display with dot and line plots of pairwise nucleotide sequence distances
Description
This tree is to provide accession numbers from its tip labels, which are used to
calculates pairwise nucleotide sequence distances. The distance matrix
then is visualized as dot and line plots and attached to the tree,
demonstrating the abilities of facet_plot() of ggtree that can add
multiple layers to a specific panel.
Reproduction fo Fig. 1 of (Chen et al. 2017).
Chap.13.1
Format
S3 class:phylo
References
Chen, Zigui, Wendy C. S. Ho, Siaw Shi Boon, Priscilla T. Y. Law, Martin C. W. Chan, Rob DeSalle, Robert D. Burk, and Paul K. S. Chan.
Ancient Evolution and Dispersion of Human Papillomavirus 58 Variants.
Journal of Virology, Volume 91, Issue 21, November 2017, e01285–17.
doi: 10.1128/JVI.01285-17
Examples
data(tree_HPV58)
TDbook documentation built on Aug. 13, 2022, 5:05 p.m.
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| data-tree_HPV58 | R Documentation |
Tree to display with dot and line plots of pairwise nucleotide sequence distances
Description
This tree is to provide accession numbers from its tip labels, which are used to
calculates pairwise nucleotide sequence distances. The distance matrix
then is visualized as dot and line plots and attached to the tree,
demonstrating the abilities of facet_plot() of ggtree that can add
multiple layers to a specific panel.
Reproduction fo Fig. 1 of (Chen et al. 2017).
Chap.13.1
Format
S3 class:phylo
References
Chen, Zigui, Wendy C. S. Ho, Siaw Shi Boon, Priscilla T. Y. Law, Martin C. W. Chan, Rob DeSalle, Robert D. Burk, and Paul K. S. Chan. Ancient Evolution and Dispersion of Human Papillomavirus 58 Variants. Journal of Virology, Volume 91, Issue 21, November 2017, e01285–17. doi: 10.1128/JVI.01285-17
Examples
data(tree_HPV58)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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