wilcox_TOST: TOST with Wilcoxon-Mann-Whitney tests

In TOSTER: Two One-Sided Tests (TOST) Equivalence Testing

TOST with Wilcoxon-Mann-Whitney tests

Description

A function for TOST using the non-parametric methods of the Wilcoxon-Mann-Whitney family of tests. This function uses the normal approximation and applies a continuity correction automatically.

Usage

wilcox_TOST(
  x,
  ...,
  hypothesis = "EQU",
  paired = FALSE,
  eqb,
  low_eqbound,
  high_eqbound,
  ses = "rb",
  alpha = 0.05
)

## Default S3 method:
wilcox_TOST(
  x,
  y = NULL,
  hypothesis = "EQU",
  paired = FALSE,
  eqb,
  low_eqbound,
  high_eqbound,
  ses = c("rb", "odds", "cstat"),
  alpha = 0.05,
  mu = 0,
  ...
)

## S3 method for class 'formula'
wilcox_TOST(formula, data, subset, na.action, ...)

Arguments

x	a (non-empty) numeric vector of data values.
...	further arguments to be passed to or from methods.
hypothesis	'EQU' for equivalence (default), or 'MET' for minimal effects test, the alternative hypothesis.
paired	a logical indicating whether you want a paired t-test.
eqb	Equivalence bound. Can provide 1 value (negative value is taken as the lower bound) or 2 specific values that represent the upper and lower equivalence bounds.
low_eqbound	lower equivalence bounds (deprecated).
high_eqbound	upper equivalence bounds (deprecated).
ses	Standardized effect size. Default is "rb" for rank-biserial correlation. Options also include "cstat" for concordance probability, or "odds" for Wilcoxon-Mann-Whitney odds (otherwise known as Agresti's generalized odds ratio).
alpha	alpha level (default = 0.05)
y	an optional (non-empty) numeric vector of data values.
mu	number indicating the value around which (a-)symmetry (for one-sample or paired samples) or shift (for independent samples) is to be estimated. See stats::wilcox.test.
formula	a formula of the form lhs ~ rhs where lhs is a numeric variable giving the data values and rhs either 1 for a one-sample or paired test or a factor with two levels giving the corresponding groups. If lhs is of class "Pair" and rhs is 1, a paired test is done.
data	an optional matrix or data frame (or similar: see model.frame) containing the variables in the formula formula. By default the variables are taken from environment(formula).
subset	an optional vector specifying a subset of observations to be used.
na.action	a function which indicates what should happen when the data contain NAs. Defaults to getOption("na.action").

Details

For details on the calculations in this function see vignette("robustTOST").

If only x is given, or if both x and y are given and paired is TRUE, a Wilcoxon signed rank test of the null that the distribution of x (in the one sample case) or of x - y (in the paired two sample case) is symmetric about mu is performed.

Otherwise, if both x and y are given and paired is FALSE, a Wilcoxon rank sum test (equivalent to the Mann-Whitney test: see the Note) is carried out. In this case, the null hypothesis is that the distributions of x and y differ by a location shift.

Value

An S3 object of class "TOSTnp" is returned containing the following slots:

• "TOST": A table of class "data.frame" containing two-tailed wilcoxon signed rank test and both one-tailed results.

• "eqb": A table of class "data.frame" containing equivalence bound settings.

• "effsize": table of class "data.frame" containing effect size estimates.

• "hypothesis": String stating the hypothesis being tested.

• "smd": List containing information on standardized effect size.

• "alpha": Alpha level set for the analysis.

• "method": Type of non-parametric test.

• "decision": List included text regarding the decisions for statistical inference.

References

David F. Bauer (1972). Constructing confidence sets using rank statistics. Journal of the American Statistical Association 67, 687–690. doi: 10.1080/01621459.1972.10481279.

Myles Hollander and Douglas A. Wolfe (1973). Nonparametric Statistical Methods. New York: John Wiley & Sons. Pages 27–33 (one-sample), 68–75 (two-sample). Or second edition (1999).

See Also

Other Robust tests: boot_log_TOST(), boot_t_TOST(), boot_t_test(), brunner_munzel(), log_TOST()

Other TOST: boot_log_TOST(), boot_t_TOST(), simple_htest(), t_TOST(), tsum_TOST()

Examples

data(mtcars)
wilcox_TOST(mpg ~ am,
data = mtcars,
eqb = 3)

TOSTER documentation built on Sept. 15, 2023, 1:09 a.m.