box_plot | Box plot support two levels and multiple groups with P value. |
chord_plot | Chord plot for visualizing the relationships of pathways and... |
circos_heatmap | Circos heatmap plot for visualizing gene expressing in... |
corr_heatmap | Correlation Heatmap for samples/groups based on Pearson... |
degs_lists | Paired comparisons differentially expressed genes (degs)... |
degs_stats | All DEGs of paired comparison CT-vs-LT12 stats dataframe. |
degs_stats2 | All DEGs of paired comparison CT-vs-LT12 stats2 dataframe. |
dendro_plot | Dendrograms for multiple samples/groups clustering. |
flower_plot | Flower plot for stat common and unique gene among multiple... |
gene_cluster_trend | Gene cluster trend plot for visualizing gene expression trend... |
gene_expression | All genes in all samples expression dataframe of RNA-Seq. |
gene_expression2 | Shared DEGs of all paired comparisons in all samples... |
gene_expression3 | Shared DEGs of all paired comparisons in all groups... |
gene_go_kegg | GO and KEGG annotation of background genes. |
gene_go_kegg2 | GO and KEGG annotation of background genes. |
gene_rank_plot | Gene ranking dotplot for visualizing differentailly expressed... |
go_enrich | GO enrichment analysis based on GO annotation results... |
go_enrich_bar | GO enrichment analysis and bar plot (None/Exist Reference... |
go_enrich_dot | GO enrichment analysis and dot plot (None/Exist Reference... |
go_enrich_net | GO enrichment analysis and net plot (None/Exist Reference... |
go_enrich_stat | GO enrichment analysis and stat plot (None/Exist Reference... |
heatmap_cluster | Heatmap cluster for visualizing clustered gene expression... |
heatmap_group | Heatmap group for visualizing grouped gene expression data. |
kegg_enrich | KEGG enrichment analysis based on KEGG annotation results... |
kegg_enrich_bar | KEGG enrichment analysis and bar plot (None/Exist Reference... |
kegg_enrich_dot | KEGG enrichment analysis and dot plot (None/Exist Reference... |
kegg_enrich_net | KEGG enrichment analysis and net plot (None/Exist Reference... |
ma_plot | MversusA plot for visualizing differentially expressed genes. |
network_data | Network data from WGCNA tan module top-200 dataframe. |
network_plot | Network plot for analyzing and visualizing relationship of... |
pca_analysis | PCA dimensional reduction analysis for RNA-Seq. |
pca_plot | PCA dimensional reduction visualization for RNA-Seq. |
quantile_plot | Quantile plot for visualizing data distribution. |
samples_groups | Samples and groups for gene expression. |
survival_data | Survival data as example data for survival_plot function. |
survival_plot | Survival plot for analyzing and visualizing survival data. |
table_cross | Table cross used to cross search and merge results in two... |
table_filter | Table filter used to filter row by column condition. |
table_merge | Table merge used to merge multiple variables to on variable. |
table_split | Table split used for splitting a grouped column to multiple... |
tomicsvis | TOmicsVis shiny app start function. |
traits_sex | Length, Width, Weight, and Sex traits dataframe. |
trend_plot | Trend plot for visualizing gene expression trend profile in... |
tsne_analysis | TSNE analysis for analyzing and visualizing TSNE algorithm. |
tsne_plot | TSNE plot for analyzing and visualizing TSNE algorithm. |
umap_analysis | UMAP analysis for analyzing RNA-Seq data. |
umap_plot | UMAP plot for analyzing and visualizing UMAP algorithm. |
upsetr_plot | UpSet plot for stat common and unique gene among multiple... |
venn_plot | Venn plot for stat common and unique gene among multiple... |
violin_plot | Violin plot support two levels and multiple groups with P... |
volcano_plot | Volcano plot for visualizing differentailly expressed genes. |
weight_sex | Weight and Sex traits dataframe. |
wgcna_pipeline | WGCNA analysis pipeline for RNA-Seq. |
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