TROM: Transcriptome Overlap Measure

A new bioinformatic tool for comparing transcriptomes of two biological samples from the same or different species. The mapping is conducted based on the overlap of the associated genes of different samples. More examples and detailed explanations are available in the vignette. For detailed description of the method, please refer to Li, Wei Vivian, Yiling Chen, and Jingyi Jessica Li. "TROM: A testing-based method for finding transcriptomic similarity of biological samples." Statistics in biosciences 9.1 (2017): 105-136 <doi:10.1007/s12561-016-9163-y>.

Package details

AuthorJingyi Jessica Li <[email protected]>, Wei Vivian Li <[email protected]>
MaintainerJingyi Jessica Li <[email protected]>
LicenseGPL-2
Version1.3
URL http://www.stat.ucla.edu/~jingyi.li/software-and-data/trom.html http://www.stat.ucla.edu/~jingyi.li/packages/TROM/vignette.pdf
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("TROM")

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TROM documentation built on July 2, 2018, 5 p.m.