readPatients: Converts a sample of patients into Unit Testing Definition...

In TestGenerator: Integration Unit Tests for Pharmacoepidemiological Studies

Converts a sample of patients into Unit Testing Definition JSON file.

Description

Converts a sample of patients into Unit Testing Definition JSON file.

Usage

readPatients(
  filePath = NULL,
  testName = "test",
  outputPath = NULL,
  cdmVersion = "5.3",
  extraTable = FALSE
)

Arguments

filePath	Path to the test patient data in Excel format. The Excel has sheets that represent tables from the OMOP-CDM, e.g. person, drug_exposure, condition_ocurrence, etc.
testName	A name of the test population in character.
outputPath	Path of the output file, if NULL, a folder will be created in the project folder inst/testCases.
cdmVersion	cdm version, default "5.3".
extraTable	Name of non-standard tables to be included in the test CDM.

Value

A JSON file with sample patients inside the project directory.

Examples

filePath <- system.file("extdata", "testPatientsRSV.xlsx", package = "TestGenerator")
readPatients(filePath = filePath, outputPath = tempdir())

TestGenerator documentation built on June 8, 2025, 12:47 p.m.