list_plots: List the plot identifiers of all the plots in a given multiqc...

In TidyMultiqc: Converts 'MultiQC' Reports into Tidy Data Frames

List the plot identifiers of all the plots in a given multiqc report

Description

List the plot identifiers of all the plots in a given multiqc report

Usage

list_plots(path)

Arguments

path	The file path to the multiqc report. This should be a length 1 character vector

Details

The main use for this function is finding the plot identifiers that you will then pass into the plots argument of the load_multiqc() function. Refer to the section on "Extracting Plot Data" in the main vignette for more information.

Value

A data frame containing n rows, where n is the number of plots in the report you have provided, and two columns:

id

The identifier for the plot. This is the one you should use as a name in plot_opts.

name

The plot title. This is likely what you see in the multiqc report when you open it with your browser.

Examples

# Ignore this, choose your own filepath as the `filepath` variable
filepath <- system.file("extdata", "HG00096/multiqc_data.json", package = "TidyMultiqc")
# This is the actual invocation
list_plots(filepath)

TidyMultiqc documentation built on Sept. 25, 2022, 9:05 a.m.