TilePlot: Characterization of functional genes in complex microbial communities using tiling DNA microarrays
Version 1.3.1

This package is intended for processing the output from functional gene tiling DNA microarray experiments. It produces hybridization pattern plots for each gene on the array, and statistics for each gene including mean probe intensity, median probe intensity, bright probe fraction, bright segment length dependent score, bright probe mean intensity, and bright probe median intensity. Output is generated in order of bright segment length dependent score in both a latex/eps format and tab-delimited text file. The package works in two modes: single array, and comparison of two arrays. Array comparison includes array comparison statistics: median of logarithm of one array probe divided by its counterpart on the other array, median absolute deviation of that value, and the binomial test to see whether the genes are equally abundant in both arrays.

Package details

AuthorIan Marshall
Date of publication2013-12-19 19:03:23
MaintainerIan Marshall <[email protected]>
LicenseGPL-2
Version1.3.1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("TilePlot")

Try the TilePlot package in your browser

Any scripts or data that you put into this service are public.

TilePlot documentation built on May 30, 2017, 6:56 a.m.