| full.transitions | Full Transition Matrix Computation |
| mu.mle | Maximum-Likelihood Estimation of the Mutation Rate |
| pdm | Example Dataset |
| pophistory | History of Population Size |
| sample.pop | Sample Populations from the Wright-Fisher Model |
| stationary.dist | Compute Stationary Distribution of a Markov Chain |
| time-dist | Time to Coalescent Event or Mutation |
| tm | Log-likelihood Estimation using the Time Machine |
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