Description Usage Arguments Value Examples

Estimates the distribution of the times (expressed in SEN) between two coalescent events or two mutations.

1 2 3 4 5 |

`x` |
An object of class |

A vector representing the distribution of the time to coalescent event for
`ttc`

, or the time to mutation for `ttm`

.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | ```
# Load example dataset
data(pdm)
transitions <- full.transitions(pdm$unitary.transitions, pdm$loci)
pi <- stationary.dist(transitions)
n <- 10
mu <- 1
samples <- 10
est.res <- tm(transitions, pi, pdm$population, n, mu, samples)
# Plot distributions of time to coalescent event and time to mutation
par(mfrow=c(1, 2))
plot(ttc(est.res), type="b", pch=20, lty=3, xlab="SEN", ylab="",
main="Time to coalescent event")
plot(ttm(est.res), type="b", pch=20, lty=3, xlab="SEN", ylab="",
main="Time to mutation")
``` |

TimeMachine documentation built on Sept. 11, 2018, 5:03 p.m.

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