serratia: serratia data example

In Tnseq: Identification of Conditionally Essential Genes in Transposon Sequencing Studies

Description

a small subset of the real serratia transposon sequencing data. serratia is a data frame containing insertion count data from two inoculum pools, and each pool has 6 samples (2 input and 4 output samples).

Usage

data("serratia")

Format

A data frame with 2442 observations on the following 15 variables.

GeneID

gene name

Length

gene length

Loc

insertion locations

SM_control_lib1_rep1

first input sample from pool 1

SM_control_lib1_rep2

second input sample from pool 1

SM_control_lib2_rep1

first input sample from pool 2

SM_control_lib2_rep2

second input sample from pool 2

SM_target_lib1_rep1

first output sample from pool 1

SM_target_lib1_rep2

second output sample from pool 1

SM_target_lib1_rep3

third output sample from pool 1

SM_target_lib1_rep4

forth output sample from pool 1

SM_target_lib2_rep1

first output sample from pool 2

SM_target_lib2_rep2

second output sample from pool 2

SM_target_lib2_rep3

third output sample from pool 2

SM_target_lib2_rep4

forth output sample from pool 2

Examples

data(serratia)

Tnseq documentation built on May 1, 2019, 7:31 p.m.