API for TopDom
An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
| Global functions | |
|---|---|
| Change.Point | Source code |
| Convert.Bin.To.Domain | Source code |
| Convert.Bin.To.Domain.TMP | Source code |
| Data.Norm | Source code |
| Detect.Local.Extreme | Source code |
| Get.Diamond.Matrix | Source code |
| Get.Diamond.Matrix2 | Source code |
| Get.Downstream.Triangle | Source code |
| Get.Pvalue | Source code |
| Get.Upstream.Triangle | Source code |
| TopDom | Man page Source code |
| TopDom-data | Man page |
| Which.Gap.Region | Source code |
| Which.Gap.Region2 | Source code |
| Which.Gap.Region3 | Source code |
| Which.process.region | Source code |
| `[.TopDomData` | Source code |
| `[.TopDom` | Source code |
| as_tibble.TopDomOverlapScores | Source code |
| countsPerRegion | Man page Source code |
| countsPerRegion.TopDomData | Source code |
| dim.TopDom | Source code |
| dim.TopDomData | Source code |
| ggCountHeatmap | Man page Source code |
| ggCountHeatmap.TopDomData | Source code |
| ggDomain | Man page Source code |
| ggDomainLabel | Man page Source code |
| image.TopDomData | Source code |
| legacy | Man page Source code |
| mcat | Source code |
| overlapScores | Man page Source code |
| overlapScoresOneChromosome | Source code |
| print.TopDom | Source code |
| print.TopDomData | Source code |
| print.TopDomOverlapScores | Source code |
| readHiC | Man page Source code |
| stop_if_not | Man page Source code |
| subsetByRegion | Man page Source code |
| subsetByRegion.TopDom | Source code |
| subsetByRegion.TopDomData | Source code |
